Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51970 255 / 1e-82 ATASAT1, ASAT1, ATSAT1 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) AT5G55340 253 / 4e-82 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55380 249 / 2e-80 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55350 246 / 3e-79 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34500 242 / 9e-78 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55360 233 / 6e-74 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55370 223 / 2e-70 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34520 223 / 3e-70 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34490 216 / 2e-67 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55330 207 / 3e-64 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009800 [exp] 351 / 9e-120 AT3G51970 244 / 3e-78 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.016G014700 [exp] 342 / 4e-116 AT5G55340 242 / 1e-77 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.009G055000 [exp] 334 / 2e-113 AT3G51970 314 / 7e-106 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G054900 [exp] 325 / 9e-110 AT3G51970 280 / 1e-92 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G055100 [exp] 318 / 4e-107 AT3G51970 330 / 8e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.016G014600 [exp] 315 / 1e-105 AT3G51970 299 / 1e-99 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.001G260700 [exp] 286 / 1e-94 AT3G51970 268 / 2e-87 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.008G145700 [exp] 265 / 2e-86 AT5G55340 264 / 1e-86 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.006G009600 [exp] 130 / 4e-35 AT5G55360 145 / 3e-41 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039576 [exp] 300 / 4e-100 AT3G51970 329 / 7e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Lus10022293 [exp] 184 / 5e-57 AT5G55340 178 / 2e-55 MBOAT (membrane bound O-acyl transferase) family protein (.1) Lus10003655 [exp] 133 / 6e-38 AT5G55380 126 / 5e-36 MBOAT (membrane bound O-acyl transferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0517 [poplar] [flax] MBOAT-like PF13813 [poplar] [flax] MBOAT_2 Membrane bound O-acyl transferase family
Representative CDS sequence Show only first row Show all	>Potri.001G106800.1 pacid=42790937 polypeptide=Potri.001G106800.1.p locus=Potri.001G106800 ID=Potri.001G106800.1.v4.1 annot-version=v4.1 ATGGAAGGTGAGATAAAAAACTTCATCATGGTATGGGCATCAGCTTTGTTGTTACTCTGGTACTGTCATATGGTAGGTAAGATTATCTCCAAAGGAGTAA TCAGATTCTTTGCAATCCTCCCAGTCATACTCTTCCTTTTCTACCTCCCTCTCAATCTCTTCACCATCTGGCTTGGAGGTCCAACATCTTTCTTCCTCGC TTGGCTTGCAAACTTCAAGCTCCTTCTCTTTGCCTTTGGTCAAGGCCCTCTATCAACCTCCCCTGTACCCCTCTCTCTCCCATATTTCATCTCCTTGGCT TGTCTTCCCATCAAATTTCAACAAGTCCCGCAAAAATCAGTCGATAAAGAAGTAAGCAAAGGAAGCGGCCACAAATCACCTCTGAATCATGGCCTGAAAA TTGTAGTATTGGCCATAAGCGCACCCATATATCTTCAAAAGGACCATATTCATCCAAAAATGGTATTGCTTCTCTATTGTGTATACCTTTACATTGGTCT AGAACTTGTCTTAGCAGTGGTTGCAGCCTTTGCTCGAGTCTATCTCCGTTTAGAGCTTGAGCCACAGTTCCATGAGCCATACCTAGCCACCTCATTGCAG GACTTCTGGGGTAGAAGGTGGAATCTTATGGTCACTAGTATCCTACACCCAACCGTATACAATCCAGTGATGTCCATTTCTAGCCGCTTGATTGGAAGAA AGTGGGCTGCGCTCCCAGGAGTTCTGGCATCATTCTTGGTATCTGGAATAATGCATGAAATCATTTTCTACTATATCGGAAGAAAGAAGCCCACATGGGA GCTCACCTGCTTCTTTTTCCTACACGGGATCTCTTTGGCTATTGAGATTGTCATAAAGAAAGCGTTTAATGGTAAATGGCAACTGGCTACGGTGGTGTCA AGGTTGTTGACGTTGGCATTTGTGGTGGCTACTGCCATGTGGCTGTTCATGCCGCAGGTTTTATATGCTGACTTTGATGTTAAGGCACGTAGAGAATGTA TTGCTTTCGTAAATTTTGTAAAAGATATTATCACCATTGATTCGAGGTTTAAATCGTTCATCGCCGTAACTGAAGGTTAA
AA sequence Show only first row Show all	>Potri.001G106800.1 pacid=42790937 polypeptide=Potri.001G106800.1.p locus=Potri.001G106800 ID=Potri.001G106800.1.v4.1 annot-version=v4.1 MEGEIKNFIMVWASALLLLWYCHMVGKIISKGVIRFFAILPVILFLFYLPLNLFTIWLGGPTSFFLAWLANFKLLLFAFGQGPLSTSPVPLSLPYFISLA CLPIKFQQVPQKSVDKEVSKGSGHKSPLNHGLKIVVLAISAPIYLQKDHIHPKMVLLLYCVYLYIGLELVLAVVAAFARVYLRLELEPQFHEPYLATSLQ DFWGRRWNLMVTSILHPTVYNPVMSISSRLIGRKWAALPGVLASFLVSGIMHEIIFYYIGRKKPTWELTCFFFLHGISLAIEIVIKKAFNGKWQLATVVS RLLTLAFVVATAMWLFMPQVLYADFDVKARRECIAFVNFVKDIITIDSRFKSFIAVTEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.001G106800 [exp]	0	1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003700 [exp]	1.41	0.9652
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003500 [exp]	2.44	0.9547
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	3.00	0.9343
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033900 [exp]	3.74	0.9565
AT2G42360			RING/U-box superfamily protein...		Potri.019G091400 [exp]	7.74	0.9439
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003600 [exp]	9.00	0.9113
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032800 [exp]	10.00	0.9114
AT1G74360			Leucine-rich repeat protein ki...		Potri.015G061600 [exp]	10.19	0.9114
AT1G24440			RING/U-box superfamily protein...		Potri.015G089800 [exp]	10.24	0.9021
AT1G19020			unknown protein		Potri.012G075800 [exp]	10.48	0.9337

Compare expression of checked genes

Potri.001G106800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.