Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23750 55 / 3e-09 Remorin family protein (.1.2) AT3G61260 42 / 8e-05 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124400 [exp] 136 / 2e-40 AT5G23750 129 / 6e-38 Remorin family protein (.1.2) Potri.012G140800 [exp] 56 / 8e-10 AT5G23750 98 / 2e-25 Remorin family protein (.1.2) Potri.015G143600 [exp] 55 / 3e-09 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.014G081300 [exp] 53 / 1e-08 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 49 / 3e-07 AT3G61260 167 / 2e-52 Remorin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039215 [exp] 53 / 2e-08 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10027460 [exp] 52 / 3e-08 AT3G61260 192 / 2e-62 Remorin family protein (.1) Lus10008477 [exp] 51 / 1e-07 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10001477 [exp] 48 / 1e-06 AT5G23750 162 / 3e-50 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region PF03766 [poplar] [flax] Remorin_N Remorin, N-terminal region
Representative CDS sequence Show only first row Show all	>Potri.001G107000.1 pacid=42789712 polypeptide=Potri.001G107000.1.p locus=Potri.001G107000 ID=Potri.001G107000.1.v4.1 annot-version=v4.1 ATGGGTTTCCGGGTCTTGGTGGCGAAAGTAAAAGACTTCGTTATGGGGGAGAAGGAGCCCAGGAAAGCTGAATCTGAGGGAGCTTCTCTGCCTACACAAG CTGAAGAACATGGACCTGTTAAAGAAGAGAAAGAAGCCCCTTTAAATGATTATGCTAATGAGAAGAGCTCGGTCCTGGTTACTGAAAAGGTTGCAGATCC ACCTGCTACTGCAAAAAACTCAAGGGGGCCAAATGACAGAGATGCTGTGCTTGCGAGGGTTGAAGCGGAGAAAAGATGTGCTCTAATTAAAGCATGGGAA GAAAATGAGAAAGCTAAAGCGGAGAACAAGGCTCACAAGAAACTCTCTGCCATTGGATCATGGGAGACAATCAAGAGAGAATCTGTGGAGGCAAAAATAA AGAAGTATGAGGAAAAAGTGGAAAAGAAGAAGGCTGAATATGCAGAGAAAATGAAGAACAAAGTAGCCGAACTCCACAAGGCAGCCGAGGAGAAGAAAGC AATGATTGAAGCAAAAAAAGGTGAGGACCGTCTCGAGGTAGAGGAAACTGCAGCGAAATTCCGAGCAACTGGGTATACACCAAGGAAGTGTCTTGGATTC TTAAGTGTCTAA
AA sequence Show only first row Show all	>Potri.001G107000.1 pacid=42789712 polypeptide=Potri.001G107000.1.p locus=Potri.001G107000 ID=Potri.001G107000.1.v4.1 annot-version=v4.1 MGFRVLVAKVKDFVMGEKEPRKAESEGASLPTQAEEHGPVKEEKEAPLNDYANEKSSVLVTEKVADPPATAKNSRGPNDRDAVLARVEAEKRCALIKAWE ENEKAKAENKAHKKLSAIGSWETIKRESVEAKIKKYEEKVEKKKAEYAEKMKNKVAELHKAAEEKKAMIEAKKGEDRLEVEETAAKFRATGYTPRKCLGF LSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23750			Remorin family protein (.1.2)		Potri.001G107000 [exp]	0	1
AT3G03210			unknown protein		Potri.017G139800 [exp]	1.00	0.9399
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	1.73	0.9294
AT1G22060			unknown protein		Potri.006G120400 [exp]	2.82	0.9355
AT1G47200		WPP2	WPP domain protein 2 (.1)		Potri.002G122000 [exp]	2.82	0.9294	Pt-MAF1.1
AT1G75590			SAUR-like auxin-responsive pro...		Potri.002G024500 [exp]	3.16	0.9129
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.015G075300 [exp]	5.00	0.9287
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Potri.006G252100 [exp]	5.38	0.8823
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.001G104600 [exp]	5.47	0.9199
AT1G47200		WPP2	WPP domain protein 2 (.1)		Potri.014G021900 [exp]	5.47	0.8974	MAF1.2
AT5G57330			Galactose mutarotase-like supe...		Potri.006G165400 [exp]	5.74	0.9097

Compare expression of checked genes

Potri.001G107000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.