Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63260 415 / 2e-148 TET10 tetraspanin10 (.1.2.3) AT2G23810 202 / 2e-64 TET8 tetraspanin8 (.1) AT3G45600 192 / 3e-60 TET3 tetraspanin3 (.1) AT4G30430 190 / 2e-59 TET9 tetraspanin9 (.1) AT4G28050 188 / 5e-59 TET7 tetraspanin7 (.1) AT1G18520 165 / 9e-50 TET11 tetraspanin11 (.1) AT2G19580 164 / 2e-49 TET2 tetraspanin2 (.1) AT5G46700 162 / 9e-49 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT3G12090 158 / 5e-47 TET6 tetraspanin6 (.1) AT5G60220 154 / 3e-45 TET4 tetraspanin4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G177900 [exp] 200 / 1e-63 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.018G099800 [exp] 190 / 9e-60 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.008G041600 [exp] 182 / 2e-56 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.003G093000 [exp] 181 / 3e-56 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.010G220300 [exp] 181 / 7e-56 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.015G055700 [exp] 179 / 2e-55 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.009G015100 [exp] 170 / 1e-51 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.006G150400 [exp] 169 / 2e-51 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.001G141400 [exp] 169 / 3e-51 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029562 [exp] 413 / 2e-147 AT1G63260 408 / 1e-145 tetraspanin10 (.1.2.3) Lus10002230 [exp] 411 / 1e-146 AT1G63260 405 / 3e-144 tetraspanin10 (.1.2.3) Lus10023216 [exp] 213 / 2e-68 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10008891 [exp] 211 / 7e-68 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10019965 [exp] 204 / 4e-65 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10015494 [exp] 194 / 3e-61 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10017336 [exp] 186 / 5e-58 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10008563 [exp] 182 / 1e-56 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10001668 [exp] 172 / 8e-53 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10038473 [exp] 160 / 1e-47 AT3G45600 446 / 9e-160 tetraspanin3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [poplar] [flax] Tetraspannin PF00335 [poplar] [flax] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Potri.001G107200.1 pacid=42792646 polypeptide=Potri.001G107200.1.p locus=Potri.001G107200 ID=Potri.001G107200.1.v4.1 annot-version=v4.1 ATGGGTGTAGGCACCAGCAACTTTGTGATTAGATGGATCAACTTTCTCACCATGCTTTTAGCTATAGCTGTCATAATTTTTGGGGTATGGATGAGCACAC ATCATGACAGTTGTCGAAGGTCTCTTACTCTCCCAGTGTTGGGCCTTGGTGCTGTCATCTTTGTAATATCAATAATTGGGTTCTTGGGCGCCTTGAAGAG CAACTCCATACTGTTGTGGATTTATCTGGTTATGTTGTGTATCATTTTGGTGGCAATTCTGGTTTTCACAGTATTAGCGTTTATTATAACTAATAATGGA TCTGGTCATAGTGTCCCTGGTTTGAGATACAAGGAGTATCAACTTCAGGATTACAGCTCATGGTTTCTTAAACAGTTGAACAACACCAAGAACTGGAACC GATTGAAGAGTTGTCTTGTGAAAACTGATGACTGCAATAACCTACCAAGAAAATATAAGACTATTAAGCAGTACAAGTCAGCCAAACTAACAGCCATTGA AGCTGGTTGCTGCCGACCACCATCCGTGTGCGGTTATCCTGCTGTCAATGCTTCATACTACGACTTGAGCTTTCATCCGATTAGCTCCAATAAGGACTGC AAACTTTACAAAAATTCCCGGGCTACCAAATGCTACAATTGTGATTCCTGCAAGGCAGGAGTTGCACAATATATGAAAACTGAGTGGAGAGTGGTTGCCA TCTTTAATGTCATTCTGTTTGTTGTTCTGTCAATGATCTATTTTGTCGGGTGTTGTGCCAGACGAAGTGCTGCCAGGAGTCACTCTAAAGCTTGA
AA sequence Show only first row Show all	>Potri.001G107200.1 pacid=42792646 polypeptide=Potri.001G107200.1.p locus=Potri.001G107200 ID=Potri.001G107200.1.v4.1 annot-version=v4.1 MGVGTSNFVIRWINFLTMLLAIAVIIFGVWMSTHHDSCRRSLTLPVLGLGAVIFVISIIGFLGALKSNSILLWIYLVMLCIILVAILVFTVLAFIITNNG SGHSVPGLRYKEYQLQDYSSWFLKQLNNTKNWNRLKSCLVKTDDCNNLPRKYKTIKQYKSAKLTAIEAGCCRPPSVCGYPAVNASYYDLSFHPISSNKDC KLYKNSRATKCYNCDSCKAGVAQYMKTEWRVVAIFNVILFVVLSMIYFVGCCARRSAARSHSKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Potri.001G107200 [exp]	0	1
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007400 [exp]	1.41	0.8995	Pt-ARF1.7
AT4G22560			unknown protein		Potri.001G121600 [exp]	2.00	0.8930
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Potri.016G041600 [exp]	2.00	0.8860	ERD15.2
AT5G25360			unknown protein		Potri.018G130900 [exp]	2.64	0.8816
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Potri.009G001100 [exp]	6.16	0.8623
AT5G60010			ferric reductase-like transmem...		Potri.006G097200 [exp]	6.32	0.8766
AT5G25240			unknown protein		Potri.006G259300 [exp]	7.14	0.8869
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Potri.011G141200 [exp]	9.53	0.8741
AT2G28370			Uncharacterised protein family...		Potri.004G211400 [exp]	9.94	0.8753
AT5G05670			signal recognition particle bi...		Potri.002G020900 [exp]	10.34	0.8059

Compare expression of checked genes

Potri.001G107200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.