Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63250 841 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 828 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G08610 557 / 0 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63630 541 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 531 / 0 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT5G65900 195 / 5e-53 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 191 / 4e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G22330 177 / 6e-47 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT5G60990 173 / 9e-47 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 171 / 7e-45 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124100 [exp] 1285 / 0 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G169800 [exp] 544 / 0 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 539 / 0 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 202 / 9e-56 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 202 / 1e-55 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G013900 [exp] 187 / 8e-52 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 185 / 9e-51 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 182 / 4e-50 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G423300 [exp] 174 / 3e-45 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043479 [exp] 801 / 0 AT1G63250 767 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10004017 [exp] 536 / 0 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012633 [exp] 515 / 3e-175 AT5G08610 719 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030265 [exp] 551 / 4e-174 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10010127 [exp] 458 / 2e-153 AT5G08610 639 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034109 [exp] 415 / 8e-140 AT1G63250 444 / 5e-152 DEA(D/H)-box RNA helicase family protein (.1) Lus10034110 [exp] 388 / 5e-128 AT2G07750 330 / 7e-106 DEA(D/H)-box RNA helicase family protein (.1) Lus10009616 [exp] 198 / 3e-54 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 196 / 2e-53 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 194 / 8e-53 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G107300.1 pacid=42792277 polypeptide=Potri.001G107300.1.p locus=Potri.001G107300 ID=Potri.001G107300.1.v4.1 annot-version=v4.1 ATGTACCCATCACTCATCCACCGCTCCAAATCCTTATCGGAACAGCTCCGGACCCGAATCTTCATTCGACTAATGGGTGGTGGACCACGAACCTTCCCTG GAGGTCTAAACAAATGGCAATGGAAACGCCTCCACGAGAAAAAAGCCAAAGAAAAAGAGAAACGTCTCCTTGACCAAGAAAAACAACTCTACCAAGCCCG GATGCGTTCCAACATCCGCTCCAAACTCGCCGGACAACCCGACCCGAACCTGAACCCGGACCCAAGTAAGTTCAATCCCATGAGCCCCAAAGAGCACATC AAAGCCCTCGCTGATCGGTTCATGAAAGAAGGAGCTGAAGATTTGTGGAACGAAATGGATGGGCCATTGAAAGCCCCATCAGATGAACGGCCAGGATTTG TTGGGACTAATCAACGGCCAGGATCGATTAATTCGCCATTAGATTTGAGAAAATTAATGTCAGAAGGGCGCAATGTATCGCGGCATCGCGAAGAAAACGG GTTTAATTATGTGAAAAATAGAGATTATTCCACGCGTAGAGATTTAGATTTTGGGTCCAGTGGTGTTTCTGTTAAGCCTTTAGTGCGGAAACAGAGGAAG TTTAGGATAAATGAGAGTTCTTCGAGTGATGATGATGAAGATTATGGGTTTGTTAATGACAAAGTGATGAATTTTGGGAGAGATTCAGGGAATGAGCGAG GGGCCGTGAGTAATTCGAGGAATGTGAGTGAATTTATGAAGAATAAGGGTTTTGAAACACAAAAACAGAGGAGGTTTGGGAGAAATGAGAGTGTTGATTT GGAGGGTGGGGGAGAGAGGAGAGGGAGGAGTGCGAAGGAGATTGGGAGTAGAGATGCTTTGGGGAAGTATGATGTGAAGAAGACAAGAAGGGTTCCATCA AAGGAGCTTGAGAAGAATGATTTTGCGAATGAAGTGGAGTTGATTAGGTATGAGCTGGGGAGGAAGAAGAAGTTAGCCGGAAATGACGGGGATAACGAGG ACGAGGATTCAATTCTTAGCGATAAACGATTTGATGAATGTGGTCTGTCTCCATTGACTGTCAAAGCACTTACAGCAGCTGGTTATGTTCAAATGACCAG GGTACAGGAGGCTACTCTTTCTGTCTGCCTTGAGGGTAAGGATGCTATGGTCAAAGCCAAAACTGGCAAAGGAAAAAGCGCAGCTTTTTTGCTTCCTGCA ATTGAAGCAGTTTTGAAGGCAAGAAGTAGCAATGCCAAGCTACGAGTTTCTCCGATATATGTTCTTATTCTCTGCCCCACAAGAGAGCTAGCAAGTCAGA TAGCAGCAGAAGCAAATGCTATACTGAAGTACCATGATGGAATAGTTATGCAAACACTAGTTGGAGGAACACGTTTCAAAGATGATCAGAGATGCCTTGA ATCTGATCCTTGTCAGATACTTGTTGCAACTCCTGGTCGGCTGCTGGATCACATTGAGAATAAAAGTGGTTTATCCATGCATTTGAAGGGATTGAAGATG CTTATACTTGATGAGGCTGATCACCTTCTTGATCTTGGGTTTCGGAAGGATGTGGAGAAAATTGTAGACTGCTTGCCCCGTCAGAGACAGTCCTTGCTTT TCTCTGCAACAATTCCAAAAGAGGTTCATCGAATTTCTCAGCTTGTATTGAAAAGGGAACATGATTTTGTTAATACTGTGGGTGTGAGTTGCATGGAAAC TCCTGCTAAGATCAAGCAGTCTTTTCTTGTCTCTCCACACGAATTGCATTTTCAGGTAGTGCATTATCTTCTGAAGGAGCATATCCAGAAGGCACCTGAT TACAAGGTTATTGTTTTCTGTACAACTGGGATGGTAACATCACTCATGTATCTACTTCTCCGGGAAATGAAAATGAATGTAAGGGAGATGCATTCTAGAA AGCCTCAACTCTATCGAACTCGTGTCTCTGATGAATTCCAGGAATCAAATCGTTTGGTTCTTGTTACATCTGATGTTTCTGCTTGTGGAATGAATTATCC TGATGTTACTTTGGTCATTCAGGTGGGGATTCCATGTGATCGCGAACAATATATAGATCGGCTTGGAAGAATAGGACATGAAGGGAAAGATGGAGGAGGG ATCTTATTGCTCGCACCATGGGAAGAATATTTCCTCGATGAGTTAAAAGACCTGCCACTTGATAAGTTTCCTTTACCAAAAATGGATTCAGAAACTAAGC TTAAGATGGAGGAGTCCATGTCAAAGATTGATAGTAGTGTCAAAGAAGGAGCATATCATGCTTGGCTAGACTATTATAACTCCATCAGAGAAATTGGAAG GGATAAAACCTCGCTTGTTGATCTAGCCAACCGATTTTCCGAGTCAATAGGCTTACAAAAACCACCTTCCCTCTGCAGAAAAACAGCTTTAAAGATGGGT TTGAAAGACATCCCTGGTATCCGGATCCGAAGGTAG
AA sequence Show only first row Show all	>Potri.001G107300.1 pacid=42792277 polypeptide=Potri.001G107300.1.p locus=Potri.001G107300 ID=Potri.001G107300.1.v4.1 annot-version=v4.1 MYPSLIHRSKSLSEQLRTRIFIRLMGGGPRTFPGGLNKWQWKRLHEKKAKEKEKRLLDQEKQLYQARMRSNIRSKLAGQPDPNLNPDPSKFNPMSPKEHI KALADRFMKEGAEDLWNEMDGPLKAPSDERPGFVGTNQRPGSINSPLDLRKLMSEGRNVSRHREENGFNYVKNRDYSTRRDLDFGSSGVSVKPLVRKQRK FRINESSSSDDDEDYGFVNDKVMNFGRDSGNERGAVSNSRNVSEFMKNKGFETQKQRRFGRNESVDLEGGGERRGRSAKEIGSRDALGKYDVKKTRRVPS KELEKNDFANEVELIRYELGRKKKLAGNDGDNEDEDSILSDKRFDECGLSPLTVKALTAAGYVQMTRVQEATLSVCLEGKDAMVKAKTGKGKSAAFLLPA IEAVLKARSSNAKLRVSPIYVLILCPTRELASQIAAEANAILKYHDGIVMQTLVGGTRFKDDQRCLESDPCQILVATPGRLLDHIENKSGLSMHLKGLKM LILDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVHRISQLVLKREHDFVNTVGVSCMETPAKIKQSFLVSPHELHFQVVHYLLKEHIQKAPD YKVIVFCTTGMVTSLMYLLLREMKMNVREMHSRKPQLYRTRVSDEFQESNRLVLVTSDVSACGMNYPDVTLVIQVGIPCDREQYIDRLGRIGHEGKDGGG ILLLAPWEEYFLDELKDLPLDKFPLPKMDSETKLKMEESMSKIDSSVKEGAYHAWLDYYNSIREIGRDKTSLVDLANRFSESIGLQKPPSLCRKTALKMG LKDIPGIRIRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	0	1
AT3G06340			DNAJ heat shock N-terminal dom...		Potri.008G196201 [exp]	1.00	0.7536
AT2G19490			recA DNA recombination family ...		Potri.018G067900 [exp]	3.74	0.7088
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	8.94	0.7124
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	10.24	0.7226	Pt-LON_ARA_ARA.2
AT1G26460			Tetratricopeptide repeat (TPR)...		Potri.010G159100 [exp]	12.00	0.7108
AT3G11460			Pentatricopeptide repeat (PPR)...		Potri.006G211400 [exp]	12.48	0.6943
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	12.80	0.7207
AT2G28130			unknown protein		Potri.009G006200 [exp]	12.84	0.6959
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	18.70	0.7047
AT5G08780			winged-helix DNA-binding trans...		Potri.005G069700 [exp]	18.97	0.6764

Compare expression of checked genes

Potri.001G107300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.