Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20330 351 / 2e-122 Transcription initiation factor TFIIE, beta subunit (.1) AT4G21010 279 / 4e-94 Transcription initiation factor TFIIE, beta subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005100 [exp] 381 / 2e-134 AT4G20330 315 / 2e-108 Transcription initiation factor TFIIE, beta subunit (.1) Lus10002233 [exp] 303 / 3e-103 AT4G20330 277 / 3e-93 Transcription initiation factor TFIIE, beta subunit (.1) Lus10029563 [exp] 298 / 3e-101 AT4G20330 273 / 2e-91 Transcription initiation factor TFIIE, beta subunit (.1) Lus10034352 [exp] 0 / 1 ND 38 / 3e-07
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF02186 [poplar] [flax] TFIIE_beta TFIIE beta subunit core domain
Representative CDS sequence Show only first row Show all	>Potri.001G107500.2 pacid=42791989 polypeptide=Potri.001G107500.2.p locus=Potri.001G107500 ID=Potri.001G107500.2.v4.1 annot-version=v4.1 ATGGCGCTGCAAGAACAATTAGATCGATTCAAGAAGCAGCAAGAGAAGTGTCAGTCTACGCTTACAAGTATTGCGAAATCAAGGCCTTCTAAATCCAGTC TGACTCAAAAAACGGTTGCCGTAGCTCCAGCGCCATCTACCAGTGCGAGGACTCCTGCTCCTGCTGTCAAATTTTCTAATGATACGGAGAGGCTTCAGCA TATTAATAGCATTCGAAAAGCCCCTGCCGGGGCTCAAATCAAGCGTGTCATAGACCTGCTTCTAGAGACAAGGCAAGCCTTTACTCCAGAACAAATAAAT GACCACTGTTACGTTGATATGAATTCCAACAAAGCCGTGTTTGACAGTTTGAGGAACAATCCGAAAGTGCACTACGATGGGAAACGCTTCTCTTACAAGT CCAAGCATGATTTGAAGGACAAGAGTCAACTCCTTGTCTTGATACGGAAATTTCCAGAGGGCATTGCTGTCATTGACCTCAAGGATTCATACCCAAGTGT GATGGATGACTTGCAGGCTTTGAAAGCTGTAGGCCAGATTTGGCTGCTATCAAACTTTGATTCGCAGGAGGATATTGCCTACCCAAATGACCCTAGGATG GTCATTAAGGTGGATGATGACCTTAAACAGCTTTTTCGAGGGATTGAGTTGCCTCGCGATATGCTTGACATTGAGAAGGATCTCCAGAAGAATGGGATGA AACCTGCGACCAATACTGCAAAGAGGAGGGCTGCAGCTCAGGTGCAGGGCATTTCCACTAAGCAAAAGGCCAAGAAGAAGAAGCATGAGATCAGCAAGAG AACTAAGCTCACCAATGCACATCTTCCAGAACTTTTTAAAAACCTTGGTTCTTGA
AA sequence Show only first row Show all	>Potri.001G107500.2 pacid=42791989 polypeptide=Potri.001G107500.2.p locus=Potri.001G107500 ID=Potri.001G107500.2.v4.1 annot-version=v4.1 MALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPAPSTSARTPAPAVKFSNDTERLQHINSIRKAPAGAQIKRVIDLLLETRQAFTPEQIN DHCYVDMNSNKAVFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDLKDSYPSVMDDLQALKAVGQIWLLSNFDSQEDIAYPNDPRM VIKVDDDLKQLFRGIELPRDMLDIEKDLQKNGMKPATNTAKRRAAAQVQGISTKQKAKKKKHEISKRTKLTNAHLPELFKNLGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20330			Transcription initiation facto...		Potri.001G107500 [exp]	0	1
AT3G47300		SELT	SELT-like protein precursor (....		Potri.009G047000 [exp]	7.14	0.8206
					Potri.001G323200 [exp]	8.36	0.8384
AT2G31305		INH3	inhibitor-3 (.1)		Potri.005G067400 [exp]	19.39	0.8449
					Potri.019G120200 [exp]	23.91	0.8388
AT1G12450			SNARE associated Golgi protein...		Potri.001G114600 [exp]	26.43	0.7598
AT2G43810			Small nuclear ribonucleoprotei...		Potri.010G178700 [exp]	31.17	0.8293
AT2G35360			ubiquitin family protein (.1)		Potri.003G089400 [exp]	36.02	0.7812
AT1G67330			Protein of unknown function (D...		Potri.003G172300 [exp]	37.78	0.8044
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.003G049100 [exp]	41.92	0.8341
AT1G68540		TKPR2, CCRL6	tetraketide alpha-pyrone reduc...		Potri.008G120200 [exp]	59.49	0.8268

Compare expression of checked genes

Potri.001G107500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.