Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-OLP.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11650 356 / 1e-125 ATOSM34 osmotin 34 (.1) AT1G75050 193 / 2e-61 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 187 / 3e-59 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75030 182 / 2e-57 ATLP-3 thaumatin-like protein 3 (.1) AT1G77700 180 / 5e-55 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 175 / 8e-54 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38660 174 / 8e-53 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 169 / 3e-51 Pathogenesis-related thaumatin superfamily protein (.1) AT1G73620 167 / 3e-51 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 166 / 6e-51 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G102400 [exp] 437 / 9e-158 AT4G11650 360 / 2e-127 osmotin 34 (.1) Potri.001G107800 [exp] 294 / 2e-101 AT4G11650 291 / 1e-100 osmotin 34 (.1) Potri.018G096063 [exp] 293 / 6e-101 AT4G11650 314 / 2e-109 osmotin 34 (.1) Potri.001G107950 [exp] 291 / 4e-100 AT4G11650 287 / 6e-99 osmotin 34 (.1) Potri.001G222100 [exp] 180 / 2e-56 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G087100 [exp] 181 / 3e-56 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 178 / 1e-55 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G173900 [exp] 176 / 3e-54 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221800 [exp] 172 / 3e-53 AT1G75800 272 / 2e-91 Pathogenesis-related thaumatin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024511 [exp] 347 / 9e-122 AT4G11650 315 / 5e-109 osmotin 34 (.1) Lus10006302 [exp] 297 / 1e-102 AT4G11650 294 / 3e-101 osmotin 34 (.1) Lus10007034 [exp] 293 / 6e-101 AT4G11650 293 / 5e-101 osmotin 34 (.1) Lus10006690 [exp] 290 / 1e-99 AT4G11650 292 / 1e-100 osmotin 34 (.1) Lus10017170 [exp] 261 / 2e-88 AT4G11650 251 / 2e-84 osmotin 34 (.1) Lus10023897 [exp] 196 / 2e-62 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10025629 [exp] 182 / 9e-56 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 171 / 7e-52 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 168 / 3e-51 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10009058 [exp] 167 / 3e-51 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.001G107600.1 pacid=42791330 polypeptide=Potri.001G107600.1.p locus=Potri.001G107600 ID=Potri.001G107600.1.v4.1 annot-version=v4.1 ATGAGCCACTTAACCAAATTTCTCACCTCCTCCCTCCTGATCTTTAGCCTTCTCTTCATCTCTACTAATGCAGCCACCTTTGAAATCCGAAATAGTTGTC CTTACACTGTGTGGGCCGCAGCCTCACCTGGTGGTGGACGCCGTCTAGAACGTGGCCAAACTTGGAATCTTAATGTGCCTGCTGGCACGTCCATGGCTCG TATTTGGGGCCGGACAAATTGTAACTTTGATGGTGGTGGTAAGGGTCGTTGCCAAACTGGGGATTGCACCGGTGGCCTAGAGTGCAAAGGCTGGGGTGTC CCTCCTAACACTCTAGCTGAATATGCATTAAATCAATTTGGTAACTTAGATTTTTATGATATATCGCTTGTTGATGGATTTAATATCCCTATAGAATTTA GTCCAACATCAGGCGGTGGGAAGTGTCAAGCGCTTCTTTGCACGGCAGATATTAATGGGCAATGTCCTAATGAATTGAGGGCTCCTGGGGGGTGTAATAA CCCATGTTCCGTGTTCAAAACTAACGAATATTGCTGCACTAATGGGCAGGGGAGCTGTGGCCCTACCAAATTTTCAAGGTTTTTTAAGGATAGGTGCCCT ACTTCTTATAGCTATCCCCAGGATGACCCTACAAGCACATTTACATGCCCTGGCGGGACCAACTATAGGGTTATCTTTTGCCCTCGGGGGTCTCCTCATT TCCCCTTGGAGATGGTTGAAGAAAAGCGTGCAGAGTAA
AA sequence Show only first row Show all	>Potri.001G107600.1 pacid=42791330 polypeptide=Potri.001G107600.1.p locus=Potri.001G107600 ID=Potri.001G107600.1.v4.1 annot-version=v4.1 MSHLTKFLTSSLLIFSLLFISTNAATFEIRNSCPYTVWAAASPGGGRRLERGQTWNLNVPAGTSMARIWGRTNCNFDGGGKGRCQTGDCTGGLECKGWGV PPNTLAEYALNQFGNLDFYDISLVDGFNIPIEFSPTSGGGKCQALLCTADINGQCPNELRAPGGCNNPCSVFKTNEYCCTNGQGSCGPTKFSRFFKDRCP TSYSYPQDDPTSTFTCPGGTNYRVIFCPRGSPHFPLEMVEEKRAE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107600 [exp]	0	1	Pt-OLP.6
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G141700 [exp]	7.48	0.7236	Pt-CHIA5.2
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G142150 [exp]	13.71	0.7158
AT2G17550			unknown protein		Potri.005G101700 [exp]	15.74	0.6712
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Potri.010G199500 [exp]	19.39	0.6971
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G102400 [exp]	23.66	0.6289
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	24.97	0.6857
AT2G44930			Plant protein of unknown funct...		Potri.014G053900 [exp]	26.85	0.6848
AT3G63380			ATPase E1-E2 type family prote...		Potri.002G047500 [exp]	28.56	0.6979
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.002G030900 [exp]	28.61	0.6682
AT5G64250			Aldolase-type TIM barrel famil...		Potri.017G051800 [exp]	30.00	0.6657

Compare expression of checked genes

Potri.001G107600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.