Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HSF6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11660 286 / 2e-94 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT5G62020 235 / 1e-75 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT1G46264 176 / 3e-52 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G36990 173 / 1e-51 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT2G41690 154 / 6e-45 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT4G17750 155 / 3e-43 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT1G32330 152 / 7e-42 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G02990 148 / 1e-40 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G22830 142 / 7e-39 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G16820 142 / 2e-38 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138900 [exp] 220 / 8e-70 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.015G141100 [exp] 218 / 5e-69 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.007G043800 [exp] 184 / 5e-56 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.001G273700 [exp] 182 / 2e-55 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.002G124800 [exp] 176 / 5e-52 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.014G027100 [exp] 176 / 7e-52 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 167 / 9e-50 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.016G056500 [exp] 166 / 1e-49 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.003G095000 [exp] 160 / 7e-45 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008007 [exp] 345 / 7e-118 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 321 / 7e-108 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10014994 [exp] 225 / 1e-71 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10019348 [exp] 190 / 2e-58 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10009351 [exp] 189 / 9e-58 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10001133 [exp] 192 / 2e-57 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10042646 [exp] 183 / 3e-54 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10036062 [exp] 158 / 1e-45 AT1G46264 245 / 3e-79 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10011065 [exp] 160 / 4e-45 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10030956 [exp] 160 / 7e-45 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.001G108100.4 pacid=42792775 polypeptide=Potri.001G108100.4.p locus=Potri.001G108100 ID=Potri.001G108100.4.v4.1 annot-version=v4.1 ATGCCGCCATTGCCTGTGGAGCAAACTGGCGAATCACCCGCCGCATGTGGCGGCGGAGCAGCAGCTGGCGGACCACCATCAGGATCGGGAGATTCGCAAA GATCTCTCCCAACTCCATTTTTAACCAAAACCTATCAGCTAGTCGATGACCCGTCGGTTGATGACTTGATTTCATGGAACGACGATGGATCAACCTTCAT AGTGTGGCGTCCTGCAGAGTTCGCTAGAGACTTGTTGCCTAAATATTTCAAGCACAACAACTTCTCTAGCTTCGTTCGCCAACTCAACACATACGGATTT AGAAAGGTGGTACCCGATCGATGGGAATTCGCGAATGACTGTTTCCGGCGAGGCGAGAAAGCACTTCTCCGCGATATTCAGCGCAGGAAAATATCTCCGA TGGCGGCATCAGCTGTAACTTCCGCCTCCGTTACGGTCGCCGCCATCCCCACGGTGGCGAGAGCGGTTTCTCCTGCTAACTCTGGTGATGACCAGGGAAT ATCGTCCACGTCGTCTCCTGGCGGGGCAGGGACGGCGGGAGGAGCAAACTCGTTTCTCCGGACGACGAGCTGCACGACGACGCCGGAGATTCTGGAGGAG AACGAGAGGTTGAGGAAGGAGAACTCGGCGCTGAGCCACGAGTTGACTCAGTTGAGAGGTCTGTGTAATAATATAATGGTGTTGATGAATAATTACGCAT CCCCTCAGTTAGAGGGTAATAGTGGAAATAGCAATAATAATTTGGCGGAAGTCAAGGCCGCTTTGGAATTGTTGCCGGTGGCGGATGAAGTGGCGGTTAG TGGTAGACCCAGGGGCGGAGCGGCGGCTACGGAGTCGGAGGTGAGCCCGAGACTGTTTGGGGTTTCTATTGGATTCAAGCGCGTGAGGATAGACGAGGAG GAGGAGGAGGAGCAGGGTAATCGGCAACAAACGGAAGGGAAAGAGCACGAATCTGACGTTAAAGCGGAGCCGCTGGATGGTAGTTCAGGGAATTCAGATC ACCAAGATCAACGGTGGTTAGATCTTGGGAAATGA
AA sequence Show only first row Show all	>Potri.001G108100.4 pacid=42792775 polypeptide=Potri.001G108100.4.p locus=Potri.001G108100 ID=Potri.001G108100.4.v4.1 annot-version=v4.1 MPPLPVEQTGESPAACGGGAAAGGPPSGSGDSQRSLPTPFLTKTYQLVDDPSVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGF RKVVPDRWEFANDCFRRGEKALLRDIQRRKISPMAASAVTSASVTVAAIPTVARAVSPANSGDDQGISSTSSPGGAGTAGGANSFLRTTSCTTTPEILEE NERLRKENSALSHELTQLRGLCNNIMVLMNNYASPQLEGNSGNSNNNLAEVKAALELLPVADEVAVSGRPRGGAAATESEVSPRLFGVSIGFKRVRIDEE EEEEQGNRQQTEGKEHESDVKAEPLDGSSGNSDHQDQRWLDLGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.001G108100 [exp]	0	1	Pt-HSF6.1
AT1G07350		SR45a	serine/arginine rich-like prot...		Potri.001G248100 [exp]	1.00	0.9142
AT2G23780			RING/U-box superfamily protein...		Potri.005G127900 [exp]	4.89	0.8275
					Potri.008G195401 [exp]	5.29	0.8600
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Potri.006G197000 [exp]	6.63	0.8125
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.018G009500 [exp]	10.58	0.8311
					Potri.011G118166 [exp]	12.04	0.8532
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Potri.014G130000 [exp]	12.40	0.7178	Pt-EID1.2
					Potri.009G092750 [exp]	20.97	0.8150
AT2G22120			RING/FYVE/PHD zinc finger supe...		Potri.005G081500 [exp]	24.65	0.7503
AT1G34470			Protein of unknown function (D...		Potri.009G047400 [exp]	28.46	0.7725

Compare expression of checked genes

Potri.001G108100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.