Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45760 60 / 3e-11 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) AT4G01200 52 / 2e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61190 49 / 2e-07 BAP1 BON association protein 1 (.1.2) AT2G13350 46 / 4e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15755 44 / 1e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 42 / 9e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 41 / 0.0003 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G078700 [exp] 54 / 3e-09 AT2G45760 116 / 1e-32 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.010G024200 [exp] 53 / 2e-08 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G078600 [exp] 52 / 2e-08 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.013G048400 [exp] 52 / 6e-08 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.003G160400 [exp] 50 / 1e-07 AT3G16510 72 / 8e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G065500 [exp] 50 / 2e-07 AT2G40815 213 / 1e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G166400 [exp] 48 / 6e-07 AT4G01200 211 / 4e-68 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 48 / 8e-07 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 47 / 1e-06 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024505 [exp] 172 / 8e-55 AT2G45760 58 / 3e-10 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10008004 [exp] 171 / 2e-54 AT2G45760 56 / 1e-09 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10008731 [exp] 52 / 4e-08 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 51 / 7e-08 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002155 [exp] 50 / 2e-07 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 50 / 2e-07 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006523 [exp] 46 / 5e-06 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 45 / 1e-05 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G108300.1 pacid=42788826 polypeptide=Potri.001G108300.1.p locus=Potri.001G108300 ID=Potri.001G108300.1.v4.1 annot-version=v4.1 ATGGAGATCACAGTCATATCAGCCCAAGGACTCAAGAAAACATCATCAGGCCCTTTCTCTCACCGTCTAAGACCCTTCATCACCATCACCGCATACCCAC CAAACCCACACAACAGTAATGAGAAGTGTCAAATGTACAGAACAAGAGTCGATGATCAAGGAGGAGAAAATCCTACATGGGGTGATAAGTTTCATGTCCC TATAGACACTGCCTTCTTTCAGAATCGGTATTCTTGTATTTATGTCCATCTCTACACAAAAAGGCCCATCACGGGCCAAGTCCAACTGGGTTGGTGCCAG GTTCCAGTTACTGATATTGGGTTTCTGTCTGAGGGTTCACTAAAGTACCTGAGTTACCGGATACTGGCTAGAGATGGTACAAGGACTCCTGGAGTTGTCA ATCTTGCTATAAGGTTAACAAGTTTTCAACAGGTTGCCGTTCTTCCAGATTCAAGAGCTTCCGCCGAGTGCAAAACCGTGATCGGTATACCGGTGACAAT GTTTTCGCACACCAGCATTTGTCAATGA
AA sequence Show only first row Show all	>Potri.001G108300.1 pacid=42788826 polypeptide=Potri.001G108300.1.p locus=Potri.001G108300 ID=Potri.001G108300.1.v4.1 annot-version=v4.1 MEITVISAQGLKKTSSGPFSHRLRPFITITAYPPNPHNSNEKCQMYRTRVDDQGGENPTWGDKFHVPIDTAFFQNRYSCIYVHLYTKRPITGQVQLGWCQ VPVTDIGFLSEGSLKYLSYRILARDGTRTPGVVNLAIRLTSFQQVAVLPDSRASAECKTVIGIPVTMFSHTSICQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Potri.001G108300 [exp]	0	1
					Potri.003G018400 [exp]	3.46	0.8615
					Potri.015G025700 [exp]	3.87	0.8194
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	6.78	0.8569	Pt-EU3.1
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.013G085201 [exp]	9.48	0.7671
AT4G38250			Transmembrane amino acid trans...		Potri.009G167900 [exp]	9.59	0.8116	PtrANT3
AT2G39805			Integral membrane Yip1 family ...		Potri.008G060300 [exp]	15.49	0.7983
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183000 [exp]	15.58	0.7948
					Potri.019G108500 [exp]	17.66	0.7981
AT5G47710			Calcium-dependent lipid-bindin...		Potri.006G004600 [exp]	18.33	0.7497
AT3G25400			unknown protein		Potri.014G148200 [exp]	18.33	0.7845

Compare expression of checked genes

Potri.001G108300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.