Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11670 1097 / 0 Protein of unknown function (DUF810) (.1) AT5G06970 523 / 4e-167 Protein of unknown function (DUF810) (.1) AT2G20010 323 / 3e-94 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G25800 303 / 6e-87 Protein of unknown function (DUF810) (.1) AT2G33420 255 / 3e-70 Protein of unknown function (DUF810) (.1) AT1G04470 234 / 2e-63 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030100 [exp] 532 / 2e-170 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.006G238200 [exp] 342 / 8e-101 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 332 / 2e-97 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 319 / 9e-93 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.010G068000 [exp] 287 / 4e-81 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.008G170200 [exp] 266 / 7e-74 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029581 [exp] 1302 / 0 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10006312 [exp] 1035 / 0 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 548 / 2e-176 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 543 / 2e-173 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 362 / 1e-107 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10023742 [exp] 249 / 6e-68 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008431 [exp] 223 / 2e-62 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 227 / 3e-61 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 191 / 2e-51 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012969 [exp] 157 / 1e-40 AT2G25800 545 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [poplar] [flax] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Potri.001G108400.7 pacid=42792555 polypeptide=Potri.001G108400.7.p locus=Potri.001G108400 ID=Potri.001G108400.7.v4.1 annot-version=v4.1 ATGGAGCAGCAAGCTACGCTGTTACATCACTACCGTCGCGATCGCCGAAAGCTGTTAGAGTTTCTGTTATCGTCAGGTTTGATCAAAGAGCCCCGTACTC CATCTGGTCCTACTAATTCACTCTCCAATCTCGATTTTGATTCTCTTAGCGCCGATTATATCATCCACTGCGTTAAATCAGCAGGTGGAGTCGTTGATGT TACTGAAGCGACTAACAAGTACTCGGATGAATCTGCTTATCCTGTCACGCTGCAGATACATTCTCAAACGAGGAGCTCCTATTTTGTTGTTTCCGAACCA GAGTCAGCTGGTTCTCCCCCTAGGCGTGCGCCTCCTCCTCTGTATGCTAAACAAGTGGCTGATACATCATGTTTATCAAGTCAAATGGATCGTGTACATG TTGAGAAGGCCACTACGTCTGGGGATGACAGCGGTCCTGGATATGAACCGGCGACAAATGCACCTACCAGGCCCTTAGAGAATTCTGAATTTCCAATTCC TTCACTTGGATTACCTAGCCTAAAGACAGGATTGTCTGATGACGACTTGCGGGAATCAGCCTACGAACTTTTGCTTGCATCTATATTTTTTTCTGGGGTT GAAGCAAATTCAGTTGAGGATAGAAGGAAGGAAAAGACTTCTAAATTTTTGTCAGGGTTGAAGAGTAAAAGGGATAAAATGCAATCACAATCTCAGTCTG TTGGAAGAAAGTCAGAACTAGTGGACATTGTCCGTGTTCAGATGCAGATTTCAGAAGCAATGGATTCATGCACTAGGCGGAATTTGATGCAGTTGGCAGC AAGGAAAATGAGTGGACAAATTGATCTTACCCATATCGCTCTTGGGCTTTTGAATGGAACTTTCAAGTCTGATTTTCTTAATGAAAGATCATATATGCAA TGGAAAAGTAGGCAGGCAAACATTTTAGAAGAACTTCTATGTTCTGCTACTGGTACAACAAATGAACATCTAACCATCAGAAGCTATGTTGCTAAAATCA GAGATGAGAAGGAATGGGATACCATGATGTCTGCTTCTGAACGTGTTGCAGTTGTAGCATCTATGAGACAGGTGGCTGTTAAACTATCATCCTTGCCTGC ACAATTTGGTATTCAAGGTGAAACCTTCTATTGGACTGCCATCTATCACGTGAACATTAGACTTTATCAGAAATTACTGTTTGGGTTATTTGATGTTCTT GATGAAGATCAGCTCATAGAGGAAGCTGATGAAATGCTGCTGCTTATAAAATTAACCTGGTCTACTTTAGGCATTACTGAAACAATGCATGATGCATTAT ATGGGTGGGTCCTTTTTCAACAGTTTGTTAGAACAGGTGGGAGTGTGCTATTAGAAAATGCAGTTCTTCACTTGCAGAAGGTCCTATCTACTGAAGAAGA TGACAGGAAGGAGCAGTATATGAATAGCCTAGTATGTACAAAGCAATGCAATGGCAGTCACTTGAAGTTGCATCTGTTGCAGTCTATTTTCGTCTCAATA AGCATGTGGTGTGACTATAAACTGCAAGATTATCATTCACATTTCAGCCAGAAACCTTATAACTTTCGAATGATAATATCCTTGGTGTCAGCAGTAGGGG TTCTTGCTTCTGATGAATCTGGTGATCTGAAGTTGATGAAATTAAACGCTTCGGATGCTAAAGCTTCTAGAAAACTTAAATCCTATGTCAAAAAGTCCAC TGAAGCTGCATTCAGGAAGGTAGCAAGTAAGGTGGATTTTGAGTCTAAAATAGAAAGGATACATCCCCTGGCTCAGCTTGCTAAAGAACTGAAGTTGATT GCTGAGACAGAGTTCAATGTGTTTCACCCGGTGTTACGTTGCTGGTGTCCTGAGTCTGTGACTATATCAGTTGTGCTATTGCACCAATTTTATGGGGAAA GACTGAAACCTTTCCTCAAGGGAGTGTCATCTGTTTCTGGAGATGCTAGATCAGTGCTTCCAGCTGCTTATATGTTGGATCAGTACCTGACTAAGCTATA TACTTCTGCTTTGGAAGCCAATAAGTTGCCGAATTCTTTCAATCAAGATTTCAAACACTATCAGATTGGAGAAATTTCGAAACCATTCATTCTTGATTGG GTGATTTCTCAGCATTCTCATATCTTGGAATGGACTGGACGTGCTTTTGATATTGAGGATTGGGAGCCTTTATCATATCATCAGAGACATGCGGCATCAA TAGTTGAAGTTTTTAGGATTATAGAGGAGACTGTGGATCAATTATTTGGCTTCAATCTTCCTATGGATATTACACATTTACAAGCCCTGCTATCTGTGAT TTTTCACAGCTTGGATGCCTATTTGATGAAAATGCTCAATCAGTTAGTTGAGAAAAACCATCTCTACCCATCAGCGCCTCCTATAACTCGCTATGCAGAG ACTGTTATTCCAATGATAAAGAGAAGTTTGGTGGTTGGTACACTTTTGGATGAGAATGTTGCTCGTAAGTTGAATGAATTGACTATACCAAAACTCTGCA TCAGGTTGAACACTCTTCAATATATTCAGAAACAAGTTGCCATTCTAGAAGATGGAATTAGAAAGTCATGGGGACTGATTAGACCATCTCTTGACCAAAG ACAAACGAAAGAAGAGGTCCTGGAAGAGAGGAGTTTGCTAACAAGCAGTGAAGCAGTTGATGCGCTGTTCGCCACCACATGTCACATAATCAGGGACACC ACAACAGATGCTATCAGAAAATTTTGCGACTTTACTGGAGCAAGAGTTGTGTTTTGGGATCTGAGAGATCAATTCCTCTTTCATTTATATCGTGGCGATG TTGGAAGTTCTCGCTTGGAAAGTTTTCTTCCTCATGTTGATACTGTTCTTGATCATATATGTGGTTTGATTGATGATACTCTCAGAGACCTTGTGGTTTT AAGCATCTGTCGTGCATCTTTGGAGGGTTATGTGTGGGTATTGCTGGATGGAGGTCCTTCTCGTGCATTTTCTGATTCAGATATCACAATGATGGAAGAT GACCTTAATGTATTGAAGGAATTCTTTGTTGCTGAAGGAGAAGGCCTTCCTCGTTCCTTAGTTGAGCAAGAAGCGAAATTTGCCCAACAAATACTTGGCT TATTTTCCCTCAAGACTGAAACTGTTATTCGCATGCTGATGAATGCAAGTGAACACATATCAATCAGAGTGGATTCTCAACATGGTCACATGGGCTTGGA AGATGCCCATACTTTAGTACGAGTGCTATGCCACAAGAAAGACAGAGAAGCGTCTAAATTCTTAAAACAGCAATATGAGCTTCCCATGTCTTCAGAGTAT GATGACACTTCATCAAGGGATTCAAATTTTGGATCACCTCTTATACCAGATCTTCTTAAGCGAAGTACCTCATTTCATTGGCCGAAAAATGGCCAAAGCA GTTTCAAATCGATAAGGAAGAAACTTCAAGCAGCAACATCTGAAATCAGGGATGTGGCCCGGTAA
AA sequence Show only first row Show all	>Potri.001G108400.7 pacid=42792555 polypeptide=Potri.001G108400.7.p locus=Potri.001G108400 ID=Potri.001G108400.7.v4.1 annot-version=v4.1 MEQQATLLHHYRRDRRKLLEFLLSSGLIKEPRTPSGPTNSLSNLDFDSLSADYIIHCVKSAGGVVDVTEATNKYSDESAYPVTLQIHSQTRSSYFVVSEP ESAGSPPRRAPPPLYAKQVADTSCLSSQMDRVHVEKATTSGDDSGPGYEPATNAPTRPLENSEFPIPSLGLPSLKTGLSDDDLRESAYELLLASIFFSGV EANSVEDRRKEKTSKFLSGLKSKRDKMQSQSQSVGRKSELVDIVRVQMQISEAMDSCTRRNLMQLAARKMSGQIDLTHIALGLLNGTFKSDFLNERSYMQ WKSRQANILEELLCSATGTTNEHLTIRSYVAKIRDEKEWDTMMSASERVAVVASMRQVAVKLSSLPAQFGIQGETFYWTAIYHVNIRLYQKLLFGLFDVL DEDQLIEEADEMLLLIKLTWSTLGITETMHDALYGWVLFQQFVRTGGSVLLENAVLHLQKVLSTEEDDRKEQYMNSLVCTKQCNGSHLKLHLLQSIFVSI SMWCDYKLQDYHSHFSQKPYNFRMIISLVSAVGVLASDESGDLKLMKLNASDAKASRKLKSYVKKSTEAAFRKVASKVDFESKIERIHPLAQLAKELKLI AETEFNVFHPVLRCWCPESVTISVVLLHQFYGERLKPFLKGVSSVSGDARSVLPAAYMLDQYLTKLYTSALEANKLPNSFNQDFKHYQIGEISKPFILDW VISQHSHILEWTGRAFDIEDWEPLSYHQRHAASIVEVFRIIEETVDQLFGFNLPMDITHLQALLSVIFHSLDAYLMKMLNQLVEKNHLYPSAPPITRYAE TVIPMIKRSLVVGTLLDENVARKLNELTIPKLCIRLNTLQYIQKQVAILEDGIRKSWGLIRPSLDQRQTKEEVLEERSLLTSSEAVDALFATTCHIIRDT TTDAIRKFCDFTGARVVFWDLRDQFLFHLYRGDVGSSRLESFLPHVDTVLDHICGLIDDTLRDLVVLSICRASLEGYVWVLLDGGPSRAFSDSDITMMED DLNVLKEFFVAEGEGLPRSLVEQEAKFAQQILGLFSLKTETVIRMLMNASEHISIRVDSQHGHMGLEDAHTLVRVLCHKKDREASKFLKQQYELPMSSEY DDTSSRDSNFGSPLIPDLLKRSTSFHWPKNGQSSFKSIRKKLQAATSEIRDVAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11670			Protein of unknown function (D...		Potri.001G108400 [exp]	0	1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.005G180600 [exp]	1.00	0.8020
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.006G024250 [exp]	2.82	0.7876
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.010G128600 [exp]	4.24	0.7798	PFT1.1
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	4.24	0.7505
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.013G075300 [exp]	6.40	0.7191
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	7.93	0.7959	NPH4.1
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.017G048000 [exp]	8.00	0.7511
AT1G16800			P-loop containing nucleoside t...		Potri.010G253700 [exp]	10.29	0.8012
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.009G071700 [exp]	12.96	0.7814
AT1G31910			GHMP kinase family protein (.1...		Potri.001G135500 [exp]	17.83	0.7113

Compare expression of checked genes

Potri.001G108400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.