Plant FIBer expression Database

Potri.001G109000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11720 936 / 0 HAP2, GCS1 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G180400
[exp]
45 / 5e-05 AT1G21722 153 / 3e-46 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029584
[exp]
925 / 0 AT4G11720 830 / 0.0 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1)
Lus10006315
[exp]
750 / 0 AT4G11720 689 / 0.0 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1)
Lus10006316
[exp]
74 / 1e-14 ND 48 / 1e-06
Lus10024496
[exp]
48 / 2e-06 AT4G11720 66 / 2e-13 GENERATIVE CELL-SPECIFIC 1, hapless 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10699 HAP2-GCS1 Male gamete fusion factor
Representative CDS sequence
>Potri.001G109000.2 pacid=42790786 polypeptide=Potri.001G109000.2.p locus=Potri.001G109000 ID=Potri.001G109000.2.v4.1 annot-version=v4.1
ATGAGGAGGCATTATGAAGTGATATTCTTGATTTTCTGCATCTTCCTAAGTTATTTTACCGTGCAAAGTATAGAGATTTTGTCGAAATCGAAGCTTGAAA
GATGCGAGAAAGCCTCAGATTCTGATAATGATCTCAATTGCACCAGAAAAATCGTCTTAAACATGGCTGTTCCCAGCGGTTCTAGTGGTGGAGAGGCGTC
GATTGTGGCGGAAATAGCGGAAGTGGAGGAGAATGCAACTGACTTGATGGAAACAGTGAGAGTACCGCCGGTGATAACAATCAATAAAACGGCTGCGTAT
GCTTTGTATGAACTTACTTATATACGGGATGTTGCTTATAAACCTGAAGAGTATTATGTTAAGACGCGCAAATGTGACCGGGATGCCGGTGCAAATGTTG
TCAAGATATGTGAGAGGTTACAAGATGAAAATGGCCACATTATCGAGCATAGTCAGCCACTCTGTTGTCCTTGTGGGCCCCAACGGCGGGTACCATCATC
ATGCGGAAACTTTTTCGACAAACTGATGAAAGGGAAGGCCAACACTGCACACTGCGTCAGATTTCCAGGTGATTGGTTCCATGTTTTTGGTATTGGACAG
CGATCAATGGGTTTCAGTGTACGAATTGAGGTGAAGACAGGATCTAAAGTTTCGGAAGTTACTGTGGGCCCCGAAAATAGAACAGTAACATCCAAGGATA
ATTTTCTAAGGGTTAATCTCATTGGAGATTTTGTTGGATACTCGAATATTCCATCATTTGAGGACTTCTACCTCGTCATTCCAAGGCAGGGTGAACCTGG
ACAACCACAGGATCTGGGAAGGAATTTTTCAATGTGGATGCTGCTTGAGAGAGTGAGATTTACCTTAGATGGTGTTGAATGCAACAAAATTGGTGTCAGT
TATGAAGCTTTCAGTGGGCAGCCCAACTTCTGTGCTTCACCATTTTGGAGTTGCTTGCATAATCAGTTGTGGAATTTCCATGATGCCGATCAGAACCGAA
TTAGGAGGAAGCAGTTGCCACTATATGGCGTGGAAGGAAGGTTTGAAAGGATAAACCAGCATCCAAATGCAGGGACTCATTCGTTCTCTATAGGAATTAC
TGAAGTTCTTAACACAAACCTTTTGATAGAACTAACTGCTGATGACATTGAATACGTCTACCAAAGGAGCCCAGGAAAACTTTTAAGTTTCACCATCCCT
ACATTTGAAGCCCTTACTCAATTTGGTGTTGCTACAGTCTCTGCTGAAAATATTGGGGAAGTGGAAGCGTCATATAGCTTAACGTTTGACTGCTCAAGAG
GTGTTTCGCTCATGGAGGAACAATTCTTCATTTTGAAGCCCAACGAGATTACAATTCGGTCATTTAAAATTTACCCAACAACTGATAAAGCTGCGAGATA
TGTATGTGCTGCTATTCTGAAGGACTCTGGTTTTAATGAAATTGATAGAGCGGAATGCCAATTTTTTACTACTGCTACCATCCTTGACAATGGATCACAG
ATTGCTCCCTTTCTACCACCAAAGACCAGTGTAAATGGTTTCTTTGAATCTATTGAAAACATTTGGAACAGAATTTGGGAAGGCTTAGTAGACTTCATCA
CTGGAAAAACCTGCAGACAGAAATGCTCCAGTTTCTTTGATTTCAGTTGTCACATACAATATGTATGTATGAGCTGGATGGTGATGTTTGGTCTACTTTT
GTCTATTTTTCCAACAGTGCTTGTGCTGCTATGGCTTTTGCATCAGAAAGGACTTTTTGACCCTCTTTATGACTGGTGGGAAGATCATCTTTGGACTGAC
GAGCAGAGAATCAGAGATACTCGGAGACACAATAAAGATATTCATGTGAATAGACATCATGAGTTGGGAGCAAGACAACACAAGCATAATGCTCATAAGA
AAAGAACCATTCATCAAGAGCATAGGCATAGGCATTCAGGAAGGGATACAGAGTACTATCATTATCTTCACCATGTCCACAAGGACAAGAGTAAGCACAG
GGGAAGTAAGAAAACAAGTGTCATGCAGCAAGTCTATTTGGATGGAGTGGGGAATACCAAAGTTGGACATCATGGACACAGAAAGGAGAGAGACCATGGA
AGGACTGTTAAAATAACCAGTCAGAAGTGA
AA sequence
>Potri.001G109000.2 pacid=42790786 polypeptide=Potri.001G109000.2.p locus=Potri.001G109000 ID=Potri.001G109000.2.v4.1 annot-version=v4.1
MRRHYEVIFLIFCIFLSYFTVQSIEILSKSKLERCEKASDSDNDLNCTRKIVLNMAVPSGSSGGEASIVAEIAEVEENATDLMETVRVPPVITINKTAAY
ALYELTYIRDVAYKPEEYYVKTRKCDRDAGANVVKICERLQDENGHIIEHSQPLCCPCGPQRRVPSSCGNFFDKLMKGKANTAHCVRFPGDWFHVFGIGQ
RSMGFSVRIEVKTGSKVSEVTVGPENRTVTSKDNFLRVNLIGDFVGYSNIPSFEDFYLVIPRQGEPGQPQDLGRNFSMWMLLERVRFTLDGVECNKIGVS
YEAFSGQPNFCASPFWSCLHNQLWNFHDADQNRIRRKQLPLYGVEGRFERINQHPNAGTHSFSIGITEVLNTNLLIELTADDIEYVYQRSPGKLLSFTIP
TFEALTQFGVATVSAENIGEVEASYSLTFDCSRGVSLMEEQFFILKPNEITIRSFKIYPTTDKAARYVCAAILKDSGFNEIDRAECQFFTTATILDNGSQ
IAPFLPPKTSVNGFFESIENIWNRIWEGLVDFITGKTCRQKCSSFFDFSCHIQYVCMSWMVMFGLLLSIFPTVLVLLWLLHQKGLFDPLYDWWEDHLWTD
EQRIRDTRRHNKDIHVNRHHELGARQHKHNAHKKRTIHQEHRHRHSGRDTEYYHYLHHVHKDKSKHRGSKKTSVMQQVYLDGVGNTKVGHHGHRKERDHG
RTVKITSQK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G11720 HAP2, GCS1 GENERATIVE CELL-SPECIFIC 1, ha... Potri.001G109000
[exp]
0 1
AT1G80530 Major facilitator superfamily ... Potri.006G060900
[exp]
8.48 0.9672
Potri.009G036600
[exp]
8.94 0.9905
Potri.007G040950
[exp]
11.35 0.9899
Potri.009G020201
[exp]
12.80 0.9899
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Potri.014G076000
[exp]
18.24 0.9505
AT5G05800 unknown protein Potri.014G061450
[exp]
19.20 0.9899
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Potri.009G061700
[exp]
20.49 0.9531 HF.2
AT5G44120 ATCRA1, CRU1, C... CRUCIFERINA, RmlC-like cupins ... Potri.005G224700
[exp]
22.18 0.9897 GY4.2
AT1G30870 Peroxidase superfamily protein... Potri.010G175100
[exp]
26.53 0.9894
AT3G04380 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-dom... Potri.009G138600
[exp]
27.22 0.9890

Potri.001G109000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.