Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYP87.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12740 770 / 0 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT1G78490 399 / 1e-135 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT5G48000 397 / 1e-134 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT1G55940 389 / 2e-129 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1) AT3G44970 363 / 2e-121 Cytochrome P450 superfamily protein (.1) AT4G15396 325 / 1e-106 CYP702A6 "cytochrome P450, family 702, subfamily A, polypeptide 6", cytochrome P450, family 702, subfamily A, polypeptide 6 (.1) AT4G15310 323 / 9e-106 CYP702A3 "cytochrome P450, family 702, subfamily A, polypeptide 3", cytochrome P450, family 702, subfamily A, polypeptide 3 (.1) AT4G15300 320 / 3e-104 CYP702A2 "cytochrome P450, family 702, subfamily A, polypeptide 2", cytochrome P450, family 702, subfamily A, polypeptide 2 (.1) AT1G65670 315 / 1e-102 CYP702A1 "cytochrome P450, family 702, subfamily A, polypeptide 1", cytochrome P450, family 702, subfamily A, polypeptide 1 (.1) AT4G15393 313 / 5e-102 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122500 [exp] 903 / 0 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G143600 [exp] 532 / 0 AT1G12740 475 / 3e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G183800 [exp] 527 / 0 AT1G12740 476 / 1e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270800 [exp] 504 / 1e-176 AT1G12740 488 / 2e-170 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G064900 [exp] 502 / 9e-176 AT1G12740 477 / 5e-166 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 499 / 7e-175 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270500 [exp] 499 / 8e-175 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270400 [exp] 499 / 1e-174 AT1G12740 442 / 2e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G204100 [exp] 498 / 3e-174 AT1G12740 468 / 9e-163 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024495 [exp] 838 / 0 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10017839 [exp] 718 / 0 AT1G12740 640 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10005762 [exp] 456 / 5e-157 AT1G12740 429 / 1e-146 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10042788 [exp] 414 / 3e-141 AT1G12740 397 / 1e-134 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10028628 [exp] 392 / 8e-133 AT1G12740 360 / 9e-121 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10027434 [exp] 382 / 1e-128 AT1G12740 342 / 3e-113 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10040193 [exp] 302 / 2e-97 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014240 [exp] 294 / 2e-94 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10000647 [exp] 292 / 6e-94 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10014850 [exp] 291 / 5e-93 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G109100.1 pacid=42793664 polypeptide=Potri.001G109100.1.p locus=Potri.001G109100 ID=Potri.001G109100.1.v4.1 annot-version=v4.1 ATGTGGGCTTTGTTCTTTGGAGCTTTGATTATTATAAGCATTACACATTGGGTTTACCGCTGGAGAAACCCCAGATGCAATGGCACTCTCCCACCAGGTT CAATGGGATTGCCACTTATTGGCGAGACCCTTCAGTTCTTCGCTCCAAATACTTCTTGTGACATTTCTCCATTTGTCAGAGACAGGATGAAAAGATATGG ACCAATATTCCGGACTAATTTGGTCGGAAGGCCAGTTGTAGTATCAACAGATCCGGATCTCAATTACTTTATCTTCCAACAAGAAGGAAAATTGTTCCAG AGCTGGTATCCGGATACATTCACGGAGATCTTTGGAAGGCAAAATGTTGGTTCGTTACATGGGTTCATGTACAAGTATCTTAAGAATATGGTGCTTAATC TCTTCGGTCCTGAAAGCCTTAAAAAAATGCTCCCTGAAGTTGAACAGACAGCATCAAATAGATTACAACTATGGTCTCATCAGGAATCAGTTGAATTGAA AGAAGCAACTGCAACTATGATATTTGATCTGACGGCGAAGAAGCTGATAAGTTATGATCAAGAAAATTCTTCAGAGAATCTAAGGGAGAACTTTGTTGCA TTCATACAAGGATTAATCTCCTTCCCTTTGGACATTCCAGGAACAGCATATCACGAATGCTTACAGGGTAGGAAAAAGGCAATGAGAATGCTAAAGAACC TGCTACAGGAAAGACAAGCAAATCCGAGAAAGCACGAAACTGATTTTTTTGATTATGTGCTTGAAGAACTTCAAAAGAACAAAACAATCCTTACAGAGGA AATCGCTCTGGATTTAATGTTTGTGCTGCTATTTGCCAGCTTTGAAACAACTTCCCTGGGTCTAACTTTAGCTGTCAAGTTTATATCGGACCACCCATTG GTGCTAAAGGAATTGACGGAAGAGCACGAGGGAATTCTAAAAAATCGGGAAAATGCCAACTCTGGTCTTACATGGAAGGAATACAAATCAATGAAATTCA CGTTTCAGGTCATTAATGAAACTGTTAGACTGGCAAACATAGTTCCAGGGATCTTCAGAAAAACACTTGGAGATATCCAGTTTAAGGGATATACCATTCC AGCAGGCTGGGCAGTAATGGTCTGTCCCCCCGCTGTACACTTAAACCCAGCAAAATATGAAGATCCACTTGCCTTCAATCCATGGAGATGGAAGGGTATG GAAGTAAATGGTGCATCCAAAACTTTCATGGCCTTTGGTGGTGGCATGAGATTTTGTGTTGGAACAGAGTTTACCAAGGTGCAGATGGCTGTATTTCTAC ATTGCTTGGTCACAAAGTCCAGGTGGCAAGCAATCAAAGGAGGAAATATTGTTCGAACTCCTGGTTTACAATTTCCCAGTGGTTATCACATTCAGCTCAC GGAGAGAGACAAAAGATATAACTCTACTACATAA
AA sequence Show only first row Show all	>Potri.001G109100.1 pacid=42793664 polypeptide=Potri.001G109100.1.p locus=Potri.001G109100 ID=Potri.001G109100.1.v4.1 annot-version=v4.1 MWALFFGALIIISITHWVYRWRNPRCNGTLPPGSMGLPLIGETLQFFAPNTSCDISPFVRDRMKRYGPIFRTNLVGRPVVVSTDPDLNYFIFQQEGKLFQ SWYPDTFTEIFGRQNVGSLHGFMYKYLKNMVLNLFGPESLKKMLPEVEQTASNRLQLWSHQESVELKEATATMIFDLTAKKLISYDQENSSENLRENFVA FIQGLISFPLDIPGTAYHECLQGRKKAMRMLKNLLQERQANPRKHETDFFDYVLEELQKNKTILTEEIALDLMFVLLFASFETTSLGLTLAVKFISDHPL VLKELTEEHEGILKNRENANSGLTWKEYKSMKFTFQVINETVRLANIVPGIFRKTLGDIQFKGYTIPAGWAVMVCPPAVHLNPAKYEDPLAFNPWRWKGM EVNGASKTFMAFGGGMRFCVGTEFTKVQMAVFLHCLVTKSRWQAIKGGNIVRTPGLQFPSGYHIQLTERDKRYNSTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G109100 [exp]	0	1	Pt-CYP87.1
AT4G34419			unknown protein		Potri.009G102800 [exp]	9.21	0.9196
AT5G47530			Auxin-responsive family protei...		Potri.014G161900 [exp]	13.45	0.8458
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.018G070900 [exp]	20.29	0.9030
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.007G098600 [exp]	22.00	0.8593
AT1G47340			F-box and associated interacti...		Potri.008G216000 [exp]	22.69	0.9006
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	27.05	0.9029
AT4G22030			F-box family protein with a do...		Potri.011G006900 [exp]	28.21	0.8428
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	32.92	0.9010
AT3G29034			unknown protein		Potri.010G234200 [exp]	34.19	0.8996
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.007G072100 [exp]	35.66	0.9005

Compare expression of checked genes

Potri.001G109100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.