Plant FIBer expression Database

Potri.001G109200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G63110 550 / 0 GPI transamidase subunit PIG-U (.1.2.3)
AT1G12730 503 / 1e-176 GPI transamidase subunit PIG-U (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006320
[exp]
581 / 0 AT1G63110 624 / 0.0 GPI transamidase subunit PIG-U (.1.2.3)
Lus10029590
[exp]
580 / 0 AT1G63110 640 / 0.0 GPI transamidase subunit PIG-U (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF06728 PIG-U GPI transamidase subunit PIG-U
Representative CDS sequence
>Potri.001G109200.6 pacid=42792787 polypeptide=Potri.001G109200.6.p locus=Potri.001G109200 ID=Potri.001G109200.6.v4.1 annot-version=v4.1
ATGGAGAAGAAGAAGAAGAGAGGATTTTGGAGATGGTTAATAGCATCCGTAATGTTAAGGCTGATTCTAATTTACCTCCCTAAAACCTTCAACTTAGCCT
CTCGCCCCGAAGTCTCCACTCCTCTCGTCAGCCTCCGCCGCCTGGCTGAAGGTTACTGGTTGAAGCAATCATCAATCTCTCCTTATGCTGGATCGATGTA
CCATGGATCTCCATTGTTACTCTCACTTCTTGGTCCACTCACTGTTAAAAGAATTGAAGGGCAACCTAATCATCTTCTTTGCAGTTTGGTTTTTGTCATT
GCAGATATTATTAGTGCTTTGCTTATTCGGGCTACCGGCCACACTCTACAGATGGCATATAGACAGAGCTTAAATTCACTTGACATTGTTGATCTATTAA
AAAGTTCAGATTTACTTTCTTCTGGAGATATTGCTGCACTTGTATACTTATGGAATCCTTTCACGATAGCTGCATGTGTGGGTTTATCAACTTCCCCAGT
TGAAAATCTGGTTGTCATACTGGCACTTCATGGTGCTTGTAAAGGACTAGTTCCTCTGGCAGCATTTGGATGGGTTATGTCGACACACTTGTCTCTTTAT
CCTGCAATCCTAATAATTCCAGTGATTCTTTTGTTGGGATATGGTCCTGATACTCCACCCAGAAAGCTGTTCCTGCAGAAGGGATATGGTAAAAATGGAG
ATAACCACTCAAGTGATAACTGTGGTCAACAAGAGACCAACCAATCAAAGGCAGAAGTTACATTTTCATGGCGACCAGTCATACATTTCTTATTTTGGAG
TTCTCTGTGGTCCGCCTATGTTCTGGTTCTATGCAGTATATCTGTTAAACCACATGGTAGTCTGTGGGAGATGTTTCAAAGAACATATGGATTCATTCTC
ACAATGGAAGATATGTCACCAAATATTGGTGTTCTGTGGTACTTCTTTGCTGAAGTGTTTGATTTCTTCAGAAGTTTCTTTATGATAGTTTTCCACCTGA
ATATTTTGTTTATGATATTGCCATTAGCCATACGGCTAAAGCACCGGCCCTGCTTTTTGGCTTTCATCTACATTGCAATCTCTTCAATGCTCAAATCCTA
TCCGTCAGTTGGAGATTCAGCTCTATACCTGGGTTTGTTGGGTTTGTTTCTTGATGAATTAGCAGATATGAAGTTCTCTTTCTTCCTCTTATTTGGATAT
ATTGGAGTGTCCCTTCTTAGCCCTGTGATGCACAATCTATGGATTTGGAGGGGGACAGGCAATGCAAACTTCTACTATGCAACTGGTATGGCATATGCAT
GCTTGCAGATTATTTTGGTGGTTGAGAGTGTAAGCGCTGTGCTCAACCATGACAGGAAGCTTAGAAAGTTATCTGTGACAAAGCTTCGAGATGGGAACTC
TTAA
AA sequence
>Potri.001G109200.6 pacid=42792787 polypeptide=Potri.001G109200.6.p locus=Potri.001G109200 ID=Potri.001G109200.6.v4.1 annot-version=v4.1
MEKKKKRGFWRWLIASVMLRLILIYLPKTFNLASRPEVSTPLVSLRRLAEGYWLKQSSISPYAGSMYHGSPLLLSLLGPLTVKRIEGQPNHLLCSLVFVI
ADIISALLIRATGHTLQMAYRQSLNSLDIVDLLKSSDLLSSGDIAALVYLWNPFTIAACVGLSTSPVENLVVILALHGACKGLVPLAAFGWVMSTHLSLY
PAILIIPVILLLGYGPDTPPRKLFLQKGYGKNGDNHSSDNCGQQETNQSKAEVTFSWRPVIHFLFWSSLWSAYVLVLCSISVKPHGSLWEMFQRTYGFIL
TMEDMSPNIGVLWYFFAEVFDFFRSFFMIVFHLNILFMILPLAIRLKHRPCFLAFIYIAISSMLKSYPSVGDSALYLGLLGLFLDELADMKFSFFLLFGY
IGVSLLSPVMHNLWIWRGTGNANFYYATGMAYACLQIILVVESVSAVLNHDRKLRKLSVTKLRDGNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G63110 GPI transamidase subunit PIG-U... Potri.001G109200
[exp]
0 1
AT1G03790 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-... Potri.007G138300
[exp]
1.00 0.9604
Potri.006G276750
[exp]
2.44 0.9218
AT1G68725 AGP19, ATAGP19 arabinogalactan protein 19 (.1... Potri.008G111000
[exp]
3.00 0.9406
AT3G11320 Nucleotide-sugar transporter f... Potri.001G247600
[exp]
3.16 0.9455
AT2G40320 TBL33 TRICHOME BIREFRINGENCE-LIKE 33... Potri.008G073300
[exp]
3.46 0.9297
AT2G21540 ATSFH3 SEC14-like 3 (.1.2.3) Potri.004G157600
[exp]
5.91 0.9201 Pt-SEC14.2
AT5G38970 ATBR6OX, CYP85A... brassinosteroid-6-oxidase 1 (.... Potri.004G117700
[exp]
6.00 0.8971
AT2G01290 RPI2 ribose-5-phosphate isomerase 2... Potri.001G225700
[exp]
6.00 0.9148
AT1G06130 GLX2-4 glyoxalase 2-4 (.1.2) Potri.007G131300
[exp]
9.38 0.9021 GLX2.2
AT1G34470 Protein of unknown function (D... Potri.009G047400
[exp]
9.48 0.8470

Potri.001G109200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.