Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33720 363 / 1e-120 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45550 362 / 4e-120 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G61040 359 / 3e-119 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45570 353 / 9e-117 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45560 349 / 5e-115 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45580 335 / 1e-109 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G52970 322 / 2e-104 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 316 / 4e-102 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G33730 298 / 4e-97 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT4G12300 288 / 2e-91 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025200 [exp] 535 / 0 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.015G138900 [exp] 519 / 0 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136800 [exp] 508 / 3e-177 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 501 / 1e-174 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G137200 [exp] 496 / 2e-172 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 338 / 6e-111 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 331 / 3e-108 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 328 / 4e-107 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.005G029800 [exp] 326 / 1e-105 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006323 [exp] 608 / 0 AT1G33720 371 / 1e-123 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Lus10005765 [exp] 453 / 9e-156 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027425 [exp] 452 / 2e-155 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027431 [exp] 440 / 1e-150 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027428 [exp] 433 / 5e-148 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10005766 [exp] 423 / 4e-144 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027426 [exp] 384 / 9e-129 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005767 [exp] 381 / 1e-127 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027429 [exp] 381 / 1e-127 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10040353 [exp] 357 / 4e-118 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G109300.1 pacid=42789980 polypeptide=Potri.001G109300.1.p locus=Potri.001G109300 ID=Potri.001G109300.1.v4.1 annot-version=v4.1 ATGGCTCAAACTAGCTTAACTCAAGCAATCGATCTCTTCTCTCCTATTCTCCTTCTCCTTCCTCTTTTGCTTCTGATCGTCCTCAAGCACTTTAGACATA ATTCATCACCACCATTTCCTCCAGGTCCATATCCATGGCCAATCTTAGGCAACATTCTCCAACTTGGAGATAAGCCCCATATCACCCTAACCCATTTTGC AAAAATCCATGGACCAATCTTCTCATTAAGACTTGGGACCCAACTTGTGGTTGTGGGATCCTCTCAAGCTGCTGCCATTGCAATCCTCAAGACTCATGAT AGAATTCTATCAGGGCGACATGTTCCTCACATGGCACCAAGCAAGAGTTCAGAACTCAACAAATTATCACTGGGTTGGGTTGTTGAGTGCAATGAGAGGT GGAGGTATTTACGCACAATATGCAAAAGTGAGCTTTTCTCACTCAAAGCACTAGAGTCCCAAGCATGTATAAGAGAGAGAAAAGCCAAGGAAATGATTGG TTTTATCAATAAAATGGAAGGGAAAGTAGTTAAGATTAGAGAGGTAGCAACTGCTACTGTTTTTAACATGTTGAGCAATATTTTAGTGTCGAGGGATCTT GTTAGCTTGGAGCATGAGAGCGAGGATGGAGGGATGAGTTCGGTATTAAAAGACATTGCAAGGTTGGCTTCTACTCCAAATATATCTGACTTTTATCCAC TATTGGGTCCATTAGATCTGCAAGGTTTAAGGAAGAAGACTATGGAATTGCACAGGAGGTCTTTTAATATGTGTGAAGCTATCATCCAAGAAAGAAGAGA GGGTGGGGAGGGAAAACGAGACGGTCCTGATGCTTCAAGACGTAGAGACTTTCTTGACGCTCTTATCCTCAATGGTTCAAGCGATGATCAGATTGACATT TTGCTTATGGAGCTCCTTTCTGCTGGCACAGACACAAGTAGCTCGACCATAGAATGGACAATGGCAGAGCTGATAAAGAATCCGAGATGCCTAAAGAAAG TTCAAGAAGAGATTGCAAATGTAATAAATATGAACCGGGATACAGGATTTAAGGAATCCTACCTTCCACAGCTAACATACCTTCAGGCTTGTGTCAAAGA AACCCTCAGGTTGCACCCTCCAGGACCGTTTCTTCTTCCTCACCGCGCCATCGACTCTTGCCAAGTGATGAATTACACCATTCCAAAGAACACTCAAGTG TTAGTAAATTATTGGGCTATCGGACGAGACCCCAAGAGTTGGGAGGAACCAGTAGTTTTTAATCCAGAGAGGTTCTTGAGCTCAAATTTGGATTTTAAAG GGAATGACTTTGAGTTCATACCCTTTGGCTCAGGAAGGAGAATCTGCCCTGGCCTGCCGATGGCTGCAAAACATGTTGCATTGATCATTGCTTATTTGAT CCTTTTCTTTGATTGGTCTCTTCCATGTGGAAAGAACCCTACTGATTTAGACATGAGTGAGAACTATGGCTTAACTTTGCGGAAGGAACAACCTTTACTT CTAGTTCCGACTAGTAAAAAATGA
AA sequence Show only first row Show all	>Potri.001G109300.1 pacid=42789980 polypeptide=Potri.001G109300.1.p locus=Potri.001G109300 ID=Potri.001G109300.1.v4.1 annot-version=v4.1 MAQTSLTQAIDLFSPILLLLPLLLLIVLKHFRHNSSPPFPPGPYPWPILGNILQLGDKPHITLTHFAKIHGPIFSLRLGTQLVVVGSSQAAAIAILKTHD RILSGRHVPHMAPSKSSELNKLSLGWVVECNERWRYLRTICKSELFSLKALESQACIRERKAKEMIGFINKMEGKVVKIREVATATVFNMLSNILVSRDL VSLEHESEDGGMSSVLKDIARLASTPNISDFYPLLGPLDLQGLRKKTMELHRRSFNMCEAIIQERREGGEGKRDGPDASRRRDFLDALILNGSSDDQIDI LLMELLSAGTDTSSSTIEWTMAELIKNPRCLKKVQEEIANVINMNRDTGFKESYLPQLTYLQACVKETLRLHPPGPFLLPHRAIDSCQVMNYTIPKNTQV LVNYWAIGRDPKSWEEPVVFNPERFLSSNLDFKGNDFEFIPFGSGRRICPGLPMAAKHVALIIAYLILFFDWSLPCGKNPTDLDMSENYGLTLRKEQPLL LVPTSKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.001G109300 [exp]	0	1
					Potri.003G083000 [exp]	1.41	0.9789
AT3G47690		ATEB1A, ATEB1H2	ATEB1-HOMOLOG2, ARABIDOPSIS TH...		Potri.012G069400 [exp]	4.00	0.9578	Pt-ATEB1.3
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012200 [exp]	4.47	0.9739	FLA14.12
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.004G117200 [exp]	4.58	0.9752
AT4G36790			Major facilitator superfamily ...		Potri.007G030800 [exp]	4.89	0.9598
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G015032 [exp]	6.32	0.9651
AT1G49960			Xanthine/uracil permease famil...		Potri.009G086800 [exp]	6.63	0.9551
AT2G22620			Rhamnogalacturonate lyase fami...		Potri.014G004500 [exp]	7.74	0.9551
AT5G44670			Domain of unknown function (DU...		Potri.003G156600 [exp]	8.36	0.9481
AT1G21070			Nucleotide-sugar transporter f...		Potri.005G260300 [exp]	9.53	0.9498

Compare expression of checked genes

Potri.001G109300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.