Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11740 429 / 2e-144 SAY1 Ubiquitin-like superfamily protein (.1) AT4G23040 372 / 2e-122 Ubiquitin-like superfamily protein (.1) AT4G00752 135 / 5e-34 UBX domain-containing protein (.1) AT4G10790 53 / 5e-07 UBX domain-containing protein (.1) AT2G43210 48 / 1e-05 Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122300 [exp] 820 / 0 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.014G075600 [exp] 261 / 1e-80 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1) Potri.015G080200 [exp] 66 / 2e-11 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.003G145200 [exp] 56 / 3e-08 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.017G036600 [exp] 56 / 7e-08 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2) Potri.007G123800 [exp] 53 / 4e-07 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2) Potri.001G085600 [exp] 53 / 5e-07 AT4G10790 520 / 0.0 UBX domain-containing protein (.1) Potri.008G142800 [exp] 49 / 5e-06 AT1G14570 541 / 0.0 UBX domain-containing protein (.1.2.3.4) Potri.010G098800 [exp] 44 / 0.0003 AT1G14570 554 / 0.0 UBX domain-containing protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029591 [exp] 528 / 0 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10006321 [exp] 504 / 3e-173 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10041365 [exp] 174 / 1e-47 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1) Lus10036564 [exp] 156 / 2e-41 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1) Lus10027684 [exp] 62 / 4e-10 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10017317 [exp] 50 / 3e-06 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1) Lus10026717 [exp] 50 / 4e-06 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2) Lus10026718 [exp] 50 / 4e-06 AT2G43210 341 / 8e-112 Ubiquitin-like superfamily protein (.1.2) Lus10003214 [exp] 49 / 1e-05 AT4G10790 525 / 0.0 UBX domain-containing protein (.1) Lus10025504 [exp] 48 / 2e-05 AT2G43210 355 / 1e-117 Ubiquitin-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain CL0214 [poplar] [flax] UBA PF14555 [poplar] [flax] UBA_4 UBA-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G109500.1 pacid=42787946 polypeptide=Potri.001G109500.1.p locus=Potri.001G109500 ID=Potri.001G109500.1.v4.1 annot-version=v4.1 ATGGCCAGACCTAATCAAGAAGCAATCGACACATTCATCAGCATCACAGGCGTCGCCGAAGATGCAGCGGTGCTAAAACTCGAGGAGCATGGTGGTGACC TCAATGCAGCTGTCAATGCGCATTTCAGTGAAGGAGACAGAAGCGCCATAAGACGACCTTCTATTCATGCTCCTCAAGATGATCTCATGGATATAGATGG TGATCCAATTGAAGTTGCACCACCTCCTAGAAGAAATCCTCAACCACTTCTATCTGAGAGTGTTGCTATGAATCGATTCCCACTTCTTGATCCACGTTTT CAAAGAGGTGTACTTGGTACTGGTTCTGATTTTACGAATCAGGCACCATTTGTTTCTCAACCAAGAGAAGTAAGGGAGATACCTATAGAGGTCAAGGATG GTAGTGAAGCATCTGGCCATTCTGGTCATGCTCCAATCATTGAAGATGTAACTGGAACTGAACATGCACAAGGTCCTGATATTCAGGGAACCGTCATAAT TGAGGATGATGACAATGATGATATTTCGACTTACTTAAATGCACGGGCTACCCAACGGGATAGTTCTCGTGCGGGGCATCTTAGACCTAGTGCTCCTGAA TTTGATAACTTGCCTTACTATAGCAATGACATAGAAGAAGAAATGGTTCGAGCTGCCATTGAGGCTTCAAAAAGAGAGGTTCAGGAGTTAACTGAAACTG GACCTCAGCAAAGGCAACCTCAGGTGGAGGATGCTGAACTTGAACATGTGGTTTCATTATCCTTAAGGGCAGCATTGCAAGAGAAAGCTTTGCGTGAGCA GAGGGGGAAAGCTTTGCGTGAGCAAGAGAAAGCTTCAGAAGTAGGAAGTGATGCTGTTGAGGCAGAGAAGGGGGGAATAGCTTTATTAAATGGAAGGCCG GAGGCAGGAAGCTCATCCATACACGATGAAGCAGAAGATGTGGAAGAGCAGCCTCTCATTAGGCATAGATCTAGACAAACATCTTCTGGCTCTATGGAAT CTGCTAGAGAAGCTGGAGTTGTGGAGGCTAGCCCGCCATCAAGTCCTGGACGGAGTAATATAGGAAGTCATCCCCTGCACAATGTAGATGCCTTTTCAGA TGAGTGGGGAGGCATCTCTTCTGAGGAGCATGATGAAGCAGTCATGCTTGAGGCTGCAATGTTTGGTGGAATTCCTGAAGGGACTGGATATCGCCTTCCA TATGCACCTCATCATTTTATGCAAAATGAGAATAATTATCCTCGACCAGTTCCTCGTCCTCCATCACCTTCTTTACAAGCTCAGCGCATTATCCGCGAAC AACAGGACGATGAGTATCTTGCGTCATTGGCAGCCGACAGAGAAAAAGAGATGAAGGCCATTGAGGAAGCTGAAGCTCATCGTTTACAAGAAGAAGTGGC TAGGAAAGCTGCTCTCGAAGAAGAAAGGAGAAAAGAGGAAGAATCTCGTAGACAATTGGAGGAAGCGCAGGAGTTTGAGAGACTGTTGGCAGAAAAAGAA GCTTCTCTGCCTCATGAACCTGCATCTGATGATGAAAATGCTGTAACGCTTTTGGTGCGGATGCCTGACGGCAGCCGACGTGGCCGTCGATTTCTCAAGT CTGACAACTTACAGGCTTTCTTCGATTTCATAGATATTGGCAGAGTGGTCAAGCCTGGCACTTACAGACTGGTGAGGCCATACCCAAGGCGTGCTTTCAG TGATGGAGAGAGTGCATTGACTCTCAATGAACTTGGCCTGGCCAGCAAACAGGAAGCCTTGTTTCTAGAGTCGATCTAA
AA sequence Show only first row Show all	>Potri.001G109500.1 pacid=42787946 polypeptide=Potri.001G109500.1.p locus=Potri.001G109500 ID=Potri.001G109500.1.v4.1 annot-version=v4.1 MARPNQEAIDTFISITGVAEDAAVLKLEEHGGDLNAAVNAHFSEGDRSAIRRPSIHAPQDDLMDIDGDPIEVAPPPRRNPQPLLSESVAMNRFPLLDPRF QRGVLGTGSDFTNQAPFVSQPREVREIPIEVKDGSEASGHSGHAPIIEDVTGTEHAQGPDIQGTVIIEDDDNDDISTYLNARATQRDSSRAGHLRPSAPE FDNLPYYSNDIEEEMVRAAIEASKREVQELTETGPQQRQPQVEDAELEHVVSLSLRAALQEKALREQRGKALREQEKASEVGSDAVEAEKGGIALLNGRP EAGSSSIHDEAEDVEEQPLIRHRSRQTSSGSMESAREAGVVEASPPSSPGRSNIGSHPLHNVDAFSDEWGGISSEEHDEAVMLEAAMFGGIPEGTGYRLP YAPHHFMQNENNYPRPVPRPPSPSLQAQRIIREQQDDEYLASLAADREKEMKAIEEAEAHRLQEEVARKAALEEERRKEEESRRQLEEAQEFERLLAEKE ASLPHEPASDDENAVTLLVRMPDGSRRGRRFLKSDNLQAFFDFIDIGRVVKPGTYRLVRPYPRRAFSDGESALTLNELGLASKQEALFLESI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Potri.001G109500 [exp]	0	1
AT3G04470			Ankyrin repeat family protein ...		Potri.013G047500 [exp]	5.65	0.8016
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Potri.001G171100 [exp]	7.34	0.8196
AT2G36090			F-box family protein (.1)		Potri.006G208400 [exp]	8.83	0.8099
AT5G08139			RING/U-box superfamily protein...		Potri.012G065300 [exp]	10.39	0.7681
AT2G46900			unknown protein		Potri.002G183500 [exp]	11.61	0.7991
AT5G62030			diphthamide synthesis DPH2 fam...		Potri.019G041300 [exp]	12.16	0.8142
AT4G08960			phosphotyrosyl phosphatase act...		Potri.002G099000 [exp]	13.03	0.7771
AT5G06830			unknown protein		Potri.006G059500 [exp]	14.62	0.6683
AT1G60670			Protein of unknown function (D...		Potri.010G097000 [exp]	20.90	0.7747
AT2G41060			RNA-binding (RRM/RBD/RNP motif...		Potri.005G081600 [exp]	22.27	0.7787

Compare expression of checked genes

Potri.001G109500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.