Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12710 408 / 1e-144 ATPP2-A12 phloem protein 2-A12 (.1) AT1G63090 364 / 3e-127 ATPP2-A11 phloem protein 2-A11 (.1) AT3G61060 362 / 2e-126 ATPP2-A13 phloem protein 2-A13 (.1.2) AT5G52120 309 / 1e-105 ATPP2-A14 phloem protein 2-A14 (.1) AT3G53000 306 / 3e-104 ATPP2-A15 phloem protein 2-A15 (.1) AT2G02360 102 / 3e-25 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02340 93 / 8e-22 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02240 92 / 2e-21 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT1G09155 87 / 1e-19 ATPP2-B15 phloem protein 2-B15 (.1) AT5G24560 86 / 2e-19 ATPP2-B12 phloem protein 2-B12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121900 [exp] 560 / 0 AT1G12710 401 / 9e-142 phloem protein 2-A12 (.1) Potri.014G075800 [exp] 395 / 1e-139 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2) Potri.012G136200 [exp] 368 / 6e-129 AT5G52120 353 / 3e-123 phloem protein 2-A14 (.1) Potri.015G138600 [exp] 365 / 9e-128 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1) Potri.006G117600 [exp] 316 / 4e-108 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1) Potri.005G022000 [exp] 97 / 4e-23 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 94 / 2e-22 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.018G016100 [exp] 86 / 2e-19 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.006G267000 [exp] 85 / 7e-19 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029593 [exp] 447 / 8e-160 AT1G12710 398 / 2e-140 phloem protein 2-A12 (.1) Lus10024494 [exp] 438 / 3e-156 AT1G12710 377 / 6e-132 phloem protein 2-A12 (.1) Lus10008642 [exp] 322 / 2e-110 AT3G53000 470 / 6e-169 phloem protein 2-A15 (.1) Lus10027423 [exp] 310 / 1e-105 AT3G61060 320 / 1e-109 phloem protein 2-A13 (.1.2) Lus10005769 [exp] 296 / 2e-100 AT3G61060 308 / 3e-105 phloem protein 2-A13 (.1.2) Lus10025666 [exp] 107 / 1e-26 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10018171 [exp] 96 / 2e-22 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10020674 [exp] 95 / 2e-22 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 91 / 3e-21 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10025660 [exp] 89 / 1e-20 AT2G02360 183 / 9e-57 phloem protein 2-B10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14299 [poplar] [flax] PP2 Phloem protein 2
Representative CDS sequence Show only first row Show all	>Potri.001G109800.3 pacid=42793061 polypeptide=Potri.001G109800.3.p locus=Potri.001G109800 ID=Potri.001G109800.3.v4.1 annot-version=v4.1 ATGGGCGCTAATCTTTCTTCAAGCTTTGCAGACCCAAATGTTTATTCTCTTGTTGGGTCTTTATGCTTACAACCATCACCACCGCCACCAAGGATAAAGC CAGGTCTTGGTGATTTACCAGAGAGTTGTGTCGCTTTAGTTCTTGAATATTTAAACCCATCAGAGATTTGCAGATTGGCTAAATTAAACAGGGCATTTCG TGGTGCTTCTTGGGCTGATTTTGTTTGGGAGTCAAAATTGCCTGTGAATTATGAAGATTTGATTGAAAGAGTTTTTGGTGATGGTCTCGAAGATAAGTTG TGTAAGAGAGAGGTTTATACCAGGCTTTGTAGAGCTAATACTTTTGATGATGGCACCAAGAAAGCATGGCTGGATAAGAGAACAGGAGGTGTATGCTTAT CCATTGCTTCCAAGGGGTTAGCGATAACAGGAATCGATGATCGAAGATATTGGAATCATATTCCAACAGAGGAATCTAGCTTCAACTCAGTTGCATATCT TCAGCAAATCTGGTGGTTTGAGGTTGATGGTCAATTTGAATTCCCATTTCCAGCGGGGACCTATAGCCTGTTCTTCAGACTACAATTGGGGCGGGCTGCT AAGAGGTTCGGTCGCCGCATCTGTAACACTGAGCATGTCCATGGTTGGGATATAAAACCTGTACAGTTTCAGCTATGGACTTCAGATGGCCAGTATGCCT CTTCCCAGTGTTTTTTGGAAGATCCTGGGAAATGGAACCTCTACCATGCCGGGGACTTTGTGGTTGATGGCACCAATGCATCAACAAAGCTCAAGTTCTC AATGACACAGATAGACTGTACACACACCAAAGGTGGTCTATGTTTGGACTCCATATTAGTATATCCATGTAAATTAAAAGAAGGGTTAGGGCATTTTTAA
AA sequence Show only first row Show all	>Potri.001G109800.3 pacid=42793061 polypeptide=Potri.001G109800.3.p locus=Potri.001G109800 ID=Potri.001G109800.3.v4.1 annot-version=v4.1 MGANLSSSFADPNVYSLVGSLCLQPSPPPPRIKPGLGDLPESCVALVLEYLNPSEICRLAKLNRAFRGASWADFVWESKLPVNYEDLIERVFGDGLEDKL CKREVYTRLCRANTFDDGTKKAWLDKRTGGVCLSIASKGLAITGIDDRRYWNHIPTEESSFNSVAYLQQIWWFEVDGQFEFPFPAGTYSLFFRLQLGRAA KRFGRRICNTEHVHGWDIKPVQFQLWTSDGQYASSQCFLEDPGKWNLYHAGDFVVDGTNASTKLKFSMTQIDCTHTKGGLCLDSILVYPCKLKEGLGHF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Potri.001G109800 [exp]	0	1
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.012G089900 [exp]	54.79	0.6689	CYP71AP2v1
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Potri.001G327300 [exp]	81.49	0.5836
AT4G10330			glycine-rich protein (.1)		Potri.019G063300 [exp]	82.93	0.6236
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.019G035700 [exp]	83.70	0.5868
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Potri.008G097200 [exp]	85.27	0.5992
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Potri.001G119800 [exp]	88.48	0.5538
AT4G17670			Protein of unknown function (D...		Potri.001G148700 [exp]	91.37	0.6317
AT5G35080			unknown protein		Potri.006G061600 [exp]	96.48	0.5908
AT5G03080			Phosphatidic acid phosphatase ...		Potri.016G086700 [exp]	101.16	0.6199
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.005G178200 [exp]	113.54	0.5499

Compare expression of checked genes

Potri.001G109800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.