Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25520 44 / 2e-05 SLK1 SEUSS-like 1 (.1) AT4G25515 42 / 7e-05 SLK3 SEUSS-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121800 [exp] 192 / 8e-58 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 48 / 8e-07 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.012G136100 [exp] 47 / 2e-06 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015002 [exp] 42 / 0.0001 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10038880 [exp] 41 / 0.0002 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G109901.2 pacid=42788151 polypeptide=Potri.001G109901.2.p locus=Potri.001G109901 ID=Potri.001G109901.2.v4.1 annot-version=v4.1 ATGCTTCAAAAAAGTATCGAACCACCGTTGATGACTGTTGACATATTCAAGTACTGCATGAAAGACTTGAGGACTTTCAGCTGGGATAATAAAATTGAAC CGATCGAGAGCTTGAAGAAATATTCCCAAAATTTTTCCACAACCAAACTCCAGAAAGATCAATCGCAAGAAAACGATCAGCTTGGGGTCCCTCAATGTTT TCCAACTGAACCAAATAAGTTGTCTACTTCTCATTTTCCAAGTGGAAACAGCAATGATAACTCGATTATGAGCAAGGGTGGACTATTGAATAGCTCTGAT ATGGTGCGTCACTGTATATTTCCAAAGTCTTGCATTAGCTCAAATGTGGGTAAACTGGAGCAGCCATCCCTTTTATACGAGAGATGCGAAAGAAGTGCAT CTTCCACACCATCTCAAGTTCCCAAGACTTTGAGTATTCATGCAGCGTGGGCATTTCTCAGTCTCCAATCCTGCGGAGGTAGCCAGCATTGA
AA sequence Show only first row Show all	>Potri.001G109901.2 pacid=42788151 polypeptide=Potri.001G109901.2.p locus=Potri.001G109901 ID=Potri.001G109901.2.v4.1 annot-version=v4.1 MLQKSIEPPLMTVDIFKYCMKDLRTFSWDNKIEPIESLKKYSQNFSTTKLQKDQSQENDQLGVPQCFPTEPNKLSTSHFPSGNSNDNSIMSKGGLLNSSD MVRHCIFPKSCISSNVGKLEQPSLLYERCERSASSTPSQVPKTLSIHAAWAFLSLQSCGGSQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25520		SLK1	SEUSS-like 1 (.1)		Potri.001G109901 [exp]	0	1
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.016G085200 [exp]	7.41	0.7914
AT1G78800			UDP-Glycosyltransferase superf...		Potri.001G393000 [exp]	11.61	0.7701
AT4G32340			Tetratricopeptide repeat (TPR)...		Potri.006G254300 [exp]	13.56	0.7729
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.002G068200 [exp]	22.84	0.7305
AT5G05160		REDUCED IN LATE...	REDUCED IN LATERAL GROWTH1, Le...		Potri.001G209700 [exp]	25.09	0.7474
AT2G42490			Copper amine oxidase family pr...		Potri.015G082900 [exp]	26.19	0.7392
AT1G40390			DNAse I-like superfamily prote...		Potri.003G024501 [exp]	28.21	0.7601
					Potri.006G066750 [exp]	29.29	0.7229
AT1G23780			F-box family protein (.1)		Potri.017G134500 [exp]	29.32	0.7486
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G267100 [exp]	30.19	0.7258

Compare expression of checked genes

Potri.001G109901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.