Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12650 216 / 3e-70 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024493 [exp] 269 / 5e-91 AT1G12650 228 / 4e-75 unknown protein Lus10017837 [exp] 267 / 3e-90 AT1G12650 224 / 2e-73 unknown protein Lus10020336 [exp] 265 / 1e-89 AT1G12650 216 / 2e-70 unknown protein Lus10005657 [exp] 214 / 1e-69 AT1G12650 179 / 1e-55 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06102 [poplar] [flax] RRP36 rRNA biogenesis protein RRP36
Representative CDS sequence Show only first row Show all	>Potri.001G110000.1 pacid=42789366 polypeptide=Potri.001G110000.1.p locus=Potri.001G110000 ID=Potri.001G110000.1.v4.1 annot-version=v4.1 ATGAAGAAGAAGCCCAGTAATGAATTTGGCATGTCAAGCAAAACCCATGGTGTAGAAAGTGAAGAATTGTCTTCTTCAGAGGAAGATGAGAGTGAAATAG AGAGAGAGCTGGCAGAAGTTACTTTTGAGGATCTTCAAAAAGCAAAGTCTAATGGGTCTCTTACAGTTTTTAAAAAGCCTGATCAGGAGAAGAAGGGTGG CAGAGCTAACAAGAATAGGCCGACGGAGGTGAGCTGCAAGAAGCCGGTGAGTCGTTTTCGAGAGGTTGTTCAAGTTCCTAAAAAGGTAGTACGCGATCCC CGCTTTGAGTCTTTGTGTGGCAATCTTGATGTTGAGGGGTTTAGAAAAAGATACGACTTTCTGTTTAAGAATAATCTTCCTGCTGAGAAAGAGGAACTAA AGAAGCAACTGAAGAAATCCAATGATCCGAAAGTCATTGATCAATTGAAGGAGCGTATATCTTGGATTGAGAAGCAGACGAAGTTTGAGTCAACAAAGCA GACTGATGCAGCTATACTGGCTGAGCACAAGAAGAAAGAGAGAGAAGCTGCGAAGCAAGGGAAACGGCCCTTTTATCTGAAAAAATCGGATATACGGAAA CAGAGGCTTACTGAAAAATACAACAAACTCAAGGCATCTGGCAAGCTCGAATCCTTCATTGAGAAAAGGAGGAAAAAGAATGCTGCAAAGGATCACAGAT ACATGCCATACCGAAGGTCAGCCAATAGTGAGCAACAGAGCTGA
AA sequence Show only first row Show all	>Potri.001G110000.1 pacid=42789366 polypeptide=Potri.001G110000.1.p locus=Potri.001G110000 ID=Potri.001G110000.1.v4.1 annot-version=v4.1 MKKKPSNEFGMSSKTHGVESEELSSSEEDESEIERELAEVTFEDLQKAKSNGSLTVFKKPDQEKKGGRANKNRPTEVSCKKPVSRFREVVQVPKKVVRDP RFESLCGNLDVEGFRKRYDFLFKNNLPAEKEELKKQLKKSNDPKVIDQLKERISWIEKQTKFESTKQTDAAILAEHKKKEREAAKQGKRPFYLKKSDIRK QRLTEKYNKLKASGKLESFIEKRRKKNAAKDHRYMPYRRSANSEQQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12650			unknown protein		Potri.001G110000 [exp]	0	1
AT5G47900			Protein of unknown function (D...		Potri.009G136700 [exp]	5.47	0.7833
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.015G138800 [exp]	8.00	0.7516
AT3G57340			Heat shock protein DnaJ, N-ter...		Potri.006G153700 [exp]	8.94	0.7492
AT3G47300		SELT	SELT-like protein precursor (....		Potri.001G253000 [exp]	10.86	0.7873
AT4G20150			unknown protein		Potri.003G156301 [exp]	11.83	0.7793
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Potri.005G175900 [exp]	22.22	0.7407
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.014G103900 [exp]	22.97	0.7081	GIF2.2
					Potri.011G072716 [exp]	27.98	0.7644
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.012G087000 [exp]	28.98	0.7741
AT4G39100		SHL1	short life, PHD finger family ...		Potri.009G121000 [exp]	29.15	0.7644	SHL1.1

Compare expression of checked genes

Potri.001G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.