Plant FIBer expression Database

Potri.001G110100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12640 731 / 0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
AT1G63050 709 / 0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G121700
[exp]
873 / 0 AT1G12640 714 / 0.0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006325
[exp]
731 / 0 AT1G12640 694 / 0.0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Lus10029595
[exp]
706 / 0 AT1G12640 679 / 0.0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0517 MBOAT-like PF03062 MBOAT MBOAT, membrane-bound O-acyltransferase family
Representative CDS sequence
>Potri.001G110100.1 pacid=42787924 polypeptide=Potri.001G110100.1.p locus=Potri.001G110100 ID=Potri.001G110100.1.v4.1 annot-version=v4.1
ATGGCTTTGGAGATGGAATCCATGGCCTTGGCAATCGGGGTCTCGGTCCCAGTGTTAAGGTTCCTTCTATGCTTTGTGGCGACGATTCCAGTGAGTTTCA
CCCACCGATTCGTACCGAGTCTATTTGGCAAGCACTTGTACGCTGCCCTTTCAGGGGCTTTCCTCTCGTATTTGTCTTTTGGGTTCTCTTCAAATCTTCA
CTTTTTGGTGCCTATGCTGTTGGGCTACCTTTCGATGGTCCTGTTTCGGCCGTACTGTGGAATCCTCACGTTTTTATCGGGATTCGGCTATTTAATTGGC
TGCCATATGTATTACATGAGCGGGGATGCATGGAAGGAAGGAGGCATCGATGCCACTGGGGCTTTAATGGTGTTAACACTGAAAGTCATATCGTGTGCCA
TGAGTTACAATGATGGGTTATTAAAAGAGGAAGAATTGCGAGAGGCTCAGAAGAAAAACCGCTTGATTGAGCTGCCTTCTTTTATTGAGTATGTTGGTTA
CTGCCTCTGCTGTGGTAGCCACTTTGCAGGTCCAGTTTTTGAAATGAAGGATTATCTTGAGTGGACTGAAAGGAAAGGGATTTGGGCCCCTACTGAGAAA
GGACCCGCACCATCACCTTTTGGGGCAACAATTCAAGCTCTTCTCCAAGCTACTGTTTGCATGGCCTTGTATCTGTACCTGATACCCCATTTTAACATAT
CTGGGCTCAATGGTCCCGCATACCAAGAATGGGGCTTCTGGAAACGTTTGAGTTACCAGTTTATGTCAGGATTCACAGCACGTTGGAAATATTATTTCAT
CTGGTCAATTTCAGAGGCAGCTGTTATTATCTCTGGCCTGGGTTTCAGTGGTTGGACAGACACTTCTCCATCAAAGCCAAAATGGGATCGTGCAAAAAAT
GTGGACATACTAGGTGTTGAGTTTGCTAAGAGTTCAGTTCAGCTGCCGCTTGTATGGAACATACAAGTCAGCACCTGGCTTCGTCATTATGTTTATGATA
GACTTGTTCAGAAGGGGAAGAAACCTGGTTTCTTTCAGTTGTTAGCCACGCAGACTACCAGTGCCGTTTGGCATGGATTATATCCTGGGTACATAATATT
CTTTGTCCAGTCAGCATTGATGATTGCCGGTTCAAGGGTCCTATACAGATGGCAACAAGCTATACCTTCAAATATGGATGTGGTCAAGAATTTGCTTGTG
TTTATAAGCTTTGCCTACACCGTTCTGGTTCTAAACTATTCCGCTGTTGGTTTCATGGTATTAACCTTGCAAGAAACACTTGCTTTATATGGTAGTGTAT
ATTACATTGGAACCATTGCGCCCATAGTATTGATTCTCCTTGGCAACATGATTAAACCAGCAAAGCCTTCCAGATCTAAAGCCCGGAAGGAACAGTGA
AA sequence
>Potri.001G110100.1 pacid=42787924 polypeptide=Potri.001G110100.1.p locus=Potri.001G110100 ID=Potri.001G110100.1.v4.1 annot-version=v4.1
MALEMESMALAIGVSVPVLRFLLCFVATIPVSFTHRFVPSLFGKHLYAALSGAFLSYLSFGFSSNLHFLVPMLLGYLSMVLFRPYCGILTFLSGFGYLIG
CHMYYMSGDAWKEGGIDATGALMVLTLKVISCAMSYNDGLLKEEELREAQKKNRLIELPSFIEYVGYCLCCGSHFAGPVFEMKDYLEWTERKGIWAPTEK
GPAPSPFGATIQALLQATVCMALYLYLIPHFNISGLNGPAYQEWGFWKRLSYQFMSGFTARWKYYFIWSISEAAVIISGLGFSGWTDTSPSKPKWDRAKN
VDILGVEFAKSSVQLPLVWNIQVSTWLRHYVYDRLVQKGKKPGFFQLLATQTTSAVWHGLYPGYIIFFVQSALMIAGSRVLYRWQQAIPSNMDVVKNLLV
FISFAYTVLVLNYSAVGFMVLTLQETLALYGSVYYIGTIAPIVLILLGNMIKPAKPSRSKARKEQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12640 MBOAT (membrane bound O-acyl t... Potri.001G110100
[exp]
0 1
AT5G62700 atgcp3, TUB3 tubulin beta chain 3 (.1) Potri.001G272700
[exp]
4.35 0.9312
AT5G18580 FASS2, TON2, GD... GORDO, FASS 1, EMBRYO DEFECTIV... Potri.010G022300
[exp]
9.48 0.9223
AT3G12955 SAUR-like auxin-responsive pro... Potri.001G458000
[exp]
9.89 0.9287 SAUR4
AT3G47810 ATVPS29, MAG1 VACUOLAR PROTEIN SORTING 29, M... Potri.011G077900
[exp]
11.31 0.9088
Potri.003G074051
[exp]
12.12 0.8914
AT1G75020 LPAT4 lysophosphatidyl acyltransfera... Potri.002G133100
[exp]
12.24 0.9183
AT2G45530 RING/U-box superfamily protein... Potri.011G149200
[exp]
12.72 0.9146
AT3G54120 Reticulon family protein (.1) Potri.016G110200
[exp]
14.96 0.9205
AT4G15960 alpha/beta-Hydrolases superfam... Potri.010G010800
[exp]
15.96 0.8932
AT5G42000 ORMDL family protein (.1.2) Potri.001G086300
[exp]
18.43 0.8920

Potri.001G110100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.