Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20360 716 / 0 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 478 / 8e-167 GTP binding Elongation factor Tu family protein (.1) AT1G07920 145 / 3e-38 GTP binding Elongation factor Tu family protein (.1) AT1G07930 145 / 3e-38 GTP binding Elongation factor Tu family protein (.1.2) AT1G07940 145 / 3e-38 GTP binding Elongation factor Tu family protein (.1.2) AT5G60390 145 / 3e-38 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G18070 120 / 4e-29 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 111 / 7e-26 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT2G31060 77 / 1e-14 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G04170 65 / 6e-11 EIF2 GAMMA, EIF2GAMMA eukaryotic translation initiation factor 2 gamma subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121600 [exp] 771 / 0 AT4G20360 714 / 0.0 RAB GTPase homolog E1B (.1) Potri.002G215900 [exp] 478 / 1e-166 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 475 / 2e-165 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.006G130900 [exp] 152 / 5e-41 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 151 / 2e-40 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 151 / 2e-40 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 151 / 2e-40 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 151 / 2e-40 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 150 / 2e-40 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043342 [exp] 697 / 0 AT4G20360 758 / 0.0 RAB GTPase homolog E1B (.1) Lus10017957 [exp] 697 / 0 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10041946 [exp] 690 / 0 AT4G20360 754 / 0.0 RAB GTPase homolog E1B (.1) Lus10019493 [exp] 640 / 0 AT4G20360 668 / 0.0 RAB GTPase homolog E1B (.1) Lus10027995 [exp] 473 / 5e-164 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10008161 [exp] 472 / 1e-162 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 150 / 5e-40 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 150 / 5e-40 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10019918 [exp] 149 / 9e-40 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10026488 [exp] 141 / 4e-37 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0023 [poplar] [flax] PF03143 [poplar] [flax] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Potri.001G110200.1 pacid=42793680 polypeptide=Potri.001G110200.1.p locus=Potri.001G110200 ID=Potri.001G110200.1.v4.1 annot-version=v4.1 ATGGCTGTTTCCGCCTCAGCAACCACTTTCACCTCCACAAACCTCATCTACCCCCACCACACAACCACCACATCCTCTACCTCCACCCCTACTTTCTCCC TCAAACCCACCTCCAAACTCCCCTCAAAATCCATCCTTTCCTCTTCTTTCCTCTCCCCCTTCACTCCCACTTCCCCAACCTCCCCCTTCACCACCACCCG CCACCGCACCTTCACTGTCCGTGCCGCGAGAGGGAAGTTCGAAAGAAAGAAACCCCATGTCAACATAGGCACCATAGGCCATGTAGACCACGGCAAAACA ACTCTCACTGCTGCTCTAACCATGGCTCTAGCCTCTATGGGTGGCAGTGCGCCCAAAAAATACGATGAAATCGATGCTGCACCAGAAGAACGCGCTAGAG GAATCACAATTAACACTGCTACAGTTGAATATGAGACAGAATCTCGCCATTATGCTCATGTTGATTGCCCTGGTCATGCCGATTATGTTAAGAACATGAT TACTGGTGCTGCTCAAATGGATGGAGCTATTTTGGTTGTGTCTGGCGCCGATGGTCCAATGCCACAAACAAAAGAACATATCTTGTTGGCAAAACAAGTT GGGGTTCCAAACATGGTTGTGTTTTTGAATAAACAAGATCAAGTTGATGATGAGGAGCTGTTGCAATTGGTAGAGTTGGAGGTAAGAGAATTGTTGTCTA GTTATGAGTTTCCTGGTGATGATATTCCAATTATCTCTGGTTCTGCTTTGTTAGCTTTAGAGGCTTTGATGGAAAATCCTGCTATTAAGAGAGGAGAGAA TCAATGGGTTGATAAAATTTACGAACTTATGGATAACGTTGATAATTATATACCAATTCCACAAAGGCAAACTGATTTGCCATTTTTACTTGCTGTGGAG GATGTTTTTTCTATTACCGGTCGTGGGACAGTAGCTACTGGGAGGGTTGAGAGAGGTACAATCAGAACTGGGGATACCGTAGATATTGTGGGGTTAAGGG AGACTAGGAATACAACAGTTACTGGTGTGGAAATGTTTCAAAAGATATTGGATGAAGCATTGGCAGGTGATAATGTTGGGTTGTTGTTGAGAGGTGTTCA AAAGGCTGATATTCAGAGAGGGATGGTTTTATCGAAGCCAGGGTCAATTACTCCACATACTAAATTTGAGGCGATTGTTTATGTTTTGAAGAAGGAAGAA GGTGGCAGGCATTCTCCCTTCTTTGCTGGGTATAGGCCTCAATTTTATATGAGGACCACTGATGTTACAGGGAGGGTGGCTACGATTATGAATGATAAGG ATGAGGAGTCAAAGATGGTTATGCCTGGGGATCGTGTGAAGATGATAGTGGAACTTATTATGCCCGTGGCTTGTGAGCAAGGCATGAGGTTTGCTATCAG AGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATTCAGTCCATTATTGAGTAG
AA sequence Show only first row Show all	>Potri.001G110200.1 pacid=42793680 polypeptide=Potri.001G110200.1.p locus=Potri.001G110200 ID=Potri.001G110200.1.v4.1 annot-version=v4.1 MAVSASATTFTSTNLIYPHHTTTTSSTSTPTFSLKPTSKLPSKSILSSSFLSPFTPTSPTSPFTTTRHRTFTVRAARGKFERKKPHVNIGTIGHVDHGKT TLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPAIKRGENQWVDKIYELMDNVDNYIPIPQRQTDLPFLLAVE DVFSITGRGTVATGRVERGTIRTGDTVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVLSKPGSITPHTKFEAIVYVLKKEE GGRHSPFFAGYRPQFYMRTTDVTGRVATIMNDKDEESKMVMPGDRVKMIVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.001G110200 [exp]	0	1
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.010G215900 [exp]	1.00	0.9917
AT5G62140			unknown protein		Potri.012G134500 [exp]	2.00	0.9864
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	3.00	0.9851
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.013G117000 [exp]	4.00	0.9840
AT1G69935		SHW1	short hypocotyl in white light...		Potri.008G190900 [exp]	5.19	0.9792
AT1G26220			Acyl-CoA N-acyltransferases (N...		Potri.008G113600 [exp]	6.70	0.9822
AT3G15900			unknown protein		Potri.001G202000 [exp]	7.61	0.9694
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Potri.007G106500 [exp]	8.36	0.9801
AT2G17972			unknown protein		Potri.005G115000 [exp]	8.83	0.9772
					Potri.005G112150 [exp]	8.94	0.9758

Compare expression of checked genes

Potri.001G110200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.