Plant FIBer expression Database

Potri.001G110900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23020 135 / 5e-35 unknown protein
AT4G11780 96 / 6e-21 unknown protein
AT4G00770 61 / 7e-10 unknown protein
AT5G03670 52 / 5e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G121100
[exp]
543 / 0 AT4G23020 94 / 2e-20 unknown protein
Potri.002G152700
[exp]
107 / 5e-25 AT4G00770 114 / 1e-27 unknown protein
Potri.014G077400
[exp]
87 / 3e-18 AT4G00770 127 / 7e-32 unknown protein
Potri.006G115300
[exp]
50 / 4e-06 AT5G03670 199 / 4e-57 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029604
[exp]
178 / 6e-50 AT4G23020 114 / 4e-27 unknown protein
Lus10006336
[exp]
143 / 3e-37 AT4G23020 141 / 5e-37 unknown protein
Lus10024488
[exp]
108 / 6e-25 AT4G11780 81 / 4e-16 unknown protein
Lus10023875
[exp]
46 / 7e-05 AT5G03670 231 / 2e-69 unknown protein
Lus10014378
[exp]
44 / 0.0002 AT5G03670 246 / 3e-75 unknown protein
Lus10027723
[exp]
42 / 0.001 AT5G03670 236 / 2e-71 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G110900.1 pacid=42793736 polypeptide=Potri.001G110900.1.p locus=Potri.001G110900 ID=Potri.001G110900.1.v4.1 annot-version=v4.1
ATGGCCTCTAGCTCTTCTTCTTCTAAGCAAAAATCATTTTCGATTGAAAGATCAAAACCCTTGATGCTCAAAGATTATCTTCTTGATGATCAAAGTTCAT
GCTCATCCAACGGCTTCAAGTCATTTCCTCGTCGTCGATGCTGCACAACCGTCCGACTTCTCCTCGAAATAGACCTCAAAACCAAGCAGCAGCAGCAACC
AAGGCAGCTTTTCAAAAGAAGTAAATCAAAAGCAGCTTCTACTACGATCTCAGCTCTTCAAAAAGCATCGGTTGCCGTTATGAAGGCCGTTAAACTACTC
CCATTTCCCTCACCCAACTCCACCGTGAGGTCTCCGTCACCGTCAAGAACCAGGAAGGGACTTTTACCTCGAAGTCTTTCACGGAAGCTGTTTAAGAAGA
ACTTTTGGAGAAAAGCAGCTGATCAACATGGTCAATGTAAAGAAAGAAATGAGATCAGAGGATGGAGATTGTTCGGTGAGTTCTTGGAGGAACAAGATAA
ACTGTCCGATCAAATTACAAGCGGAATTTCAACAAGCTCCAGCAGTAACAGTAACAGTAACTGTAACATTTGGACTACTGAGAGTGAATATACTGTTGAC
AGTGGTAATTCTACGTGTAACAGTTGCCGAAACGACTCCGTTTGCAATAGAAAAGATTTAATGATCAAGGAAGTCAGCGACAGAGTGAGCGTATCAGGCG
GTCAGGATTCCATCACAAACAGGAAGGAGTGGCCAAATGAGGAGGAGAAGGAGCAATCCAGTCCAGTGTCAATTCTGGACTGTCCATTCCAGGATGAAGA
AGAAGATATTGGCTCTCCTTTCCAACGTAGTCCTATCCGCGTGGAAGGAACTAAACAAAAGCTTATGCAAAAGATCAGAAGGTTTGAGAGCCTCGCTCAA
CTAGACCCTTTAGACTTGGAAAAGCGAATTGCAATGGCAGAGTTGGAGGATGAATCCCTTGAATCCCCCGTGCAACATTGTTCAGTGTCTATCCACAGTG
ATAACGACAACGATTTCAAGGAAACTAAAGAAAATGGAACCGAAAAGCATGCACAGGAGCTACTTAAGCATGTCAAATCGACAACAAGCTTGGCGTCTAA
GGTAGATAGTCTATTGCTGGACTTCTTCAAGGAGAAAATTGTAGAAAATTATGCAGGTGGAAGCATGGTTGGATCATATAAAGAATTTGAGCAAGAGCTA
AGGGTAGCTCAGGAATGGATTGATGGGCAGCCTCAAGAAATGTTTTTGGGGTGGGAGATGGTGGAGAGGAGGCATGTCTACGTCAAGCATATGGAGAAGA
GTGGGAAGTGGGAAAATGTGGATCAAGGAAAAGAAGAGGTTGCTCTAGAATTGGAAGCTGAGGTTTTCAATTCCTTGGTGGACGAAGTCTTACTTGATTA
TATTCTGCTTAATTAA
AA sequence
>Potri.001G110900.1 pacid=42793736 polypeptide=Potri.001G110900.1.p locus=Potri.001G110900 ID=Potri.001G110900.1.v4.1 annot-version=v4.1
MASSSSSSKQKSFSIERSKPLMLKDYLLDDQSSCSSNGFKSFPRRRCCTTVRLLLEIDLKTKQQQQPRQLFKRSKSKAASTTISALQKASVAVMKAVKLL
PFPSPNSTVRSPSPSRTRKGLLPRSLSRKLFKKNFWRKAADQHGQCKERNEIRGWRLFGEFLEEQDKLSDQITSGISTSSSSNSNSNCNIWTTESEYTVD
SGNSTCNSCRNDSVCNRKDLMIKEVSDRVSVSGGQDSITNRKEWPNEEEKEQSSPVSILDCPFQDEEEDIGSPFQRSPIRVEGTKQKLMQKIRRFESLAQ
LDPLDLEKRIAMAELEDESLESPVQHCSVSIHSDNDNDFKETKENGTEKHAQELLKHVKSTTSLASKVDSLLLDFFKEKIVENYAGGSMVGSYKEFEQEL
RVAQEWIDGQPQEMFLGWEMVERRHVYVKHMEKSGKWENVDQGKEEVALELEAEVFNSLVDEVLLDYILLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G23020 unknown protein Potri.001G110900
[exp]
0 1
Potri.006G073450
[exp]
1.73 0.8589
AT4G07960 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, C... Potri.005G146900
[exp]
3.00 0.8730
AT3G24480 Leucine-rich repeat (LRR) fami... Potri.018G075900
[exp]
5.47 0.8117
AT4G37260 MYB ATMYB73 myb domain protein 73 (.1) Potri.014G035100
[exp]
6.32 0.8140
AT3G24630 unknown protein Potri.018G082300
[exp]
7.74 0.8350
AT5G20680 TBL16 TRICHOME BIREFRINGENCE-LIKE 16... Potri.007G104300
[exp]
10.09 0.8705
AT4G16120 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BET... Potri.010G001100
[exp]
11.22 0.8007 ATSEB1.1
AT3G06260 GolS9, GATL4 galactinol synthase 9, galactu... Potri.010G242300
[exp]
12.40 0.7409
AT5G64310 ATAGP1, AGP1 arabinogalactan protein 1 (.1) Potri.001G310400
[exp]
13.96 0.7724
AT1G76160 SKS5 SKU5 similar 5 (.1) Potri.005G247700
[exp]
16.43 0.7598

Potri.001G110900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.