Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23010 527 / 0 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3) AT1G12600 524 / 0 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT2G02810 76 / 2e-15 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT1G14360 70 / 3e-13 ATUTR3, UTR3 UDP-galactose transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121000 [exp] 640 / 0 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.014G077500 [exp] 550 / 0 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.008G209501 [exp] 105 / 2e-28 ND / Potri.016G139100 [exp] 63 / 5e-11 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.006G110500 [exp] 63 / 9e-11 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029605 [exp] 585 / 0 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10006337 [exp] 585 / 0 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10009315 [exp] 544 / 0 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 458 / 5e-163 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10030495 [exp] 74 / 1e-14 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 61 / 4e-10 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10012848 [exp] 51 / 8e-07 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G111000.2 pacid=42792786 polypeptide=Potri.001G111000.2.p locus=Potri.001G111000 ID=Potri.001G111000.2.v4.1 annot-version=v4.1 ATGAAGGGCGAGGATCAAGCGAGGTCTTTGTTTGGGATTTCTTTATCCGATCGGCCTAAATGGCAACAGTTTCTTATTTGCTCTTCTGGGTTCTTCTTTG GCTATCTCATTAATGGCGTCTGCGAGGAATATGTGTATAATCGGCTTCAATTCAGCTATGGTTGGTATTTCACATTTGTACAAGGATTTGTGTACTTGGT GCTTATATACTTGCAGGGTTTTACCCCTAAGCAAATGGTGAATCCATGGAAAACTTATTGGAAACTCTCTGCTGTTCTTATGGGTTCTCATGGGCTGACT AAGGGGTCCCTGGCCTTTCTCAATTATCCAGCTCAAATCATGTTCAAATCCACCAAGGTACTGCCAGTTATGGTAATGGGCGCCTTTATTCCAGGATTGA GAAGAAAATATCCATTTCATGAATACATATCAGCCCTGCTTCTGGTCATCGGTCTGATCCTTTTCACCTTGGCAGATGCCCAAACATCGCCAAATTTTAG CATAATTGGTGTCCTGATGATTTCTGGTGCTTTAATTATGGATTCTTTAATGGGTAATTTGCAAGAAGCAATATTTACCATGAATCCTGACACCACTCAG ATCGAGGTGCTGTTCTGCTCGACAGTTGTTGGATTGCCTTTCTTGCTTCCTCCGATGATCCTGACTGGAGAGCTGTTTAAGGCTTGGAAATCTTGTGCTC AACATCCTTACGTGTATGGGGTGTTAGTATTTGAAGCCATGGCCACATTCATTGGCCAAATTTCTGTTCTATCCCTCATTGCCATTTTTGGGGCTGCTAC GACTGCCATGATAACAACTGCTAGAAAGGCAGTTACCTTGTTGCTGTCATATATGATATTCACAAAGCCATTAACTGAGCAGCATGGATCAGGGCTGCTG CTCATCGCCATGGGAATTATATTGAAGATGGTTCCTATAGATTATAAACCCCCCAGTAGGAGTGCACCTAGAAATGGGAAGTCCCATTTTAAAGAAGAGA AAAGTCAAGCAGATAGTAGGAAAGGTGAAGGAGATGAAGAAAAAAGGCCCTTAGTTTGA
AA sequence Show only first row Show all	>Potri.001G111000.2 pacid=42792786 polypeptide=Potri.001G111000.2.p locus=Potri.001G111000 ID=Potri.001G111000.2.v4.1 annot-version=v4.1 MKGEDQARSLFGISLSDRPKWQQFLICSSGFFFGYLINGVCEEYVYNRLQFSYGWYFTFVQGFVYLVLIYLQGFTPKQMVNPWKTYWKLSAVLMGSHGLT KGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPFHEYISALLLVIGLILFTLADAQTSPNFSIIGVLMISGALIMDSLMGNLQEAIFTMNPDTTQ IEVLFCSTVVGLPFLLPPMILTGELFKAWKSCAQHPYVYGVLVFEAMATFIGQISVLSLIAIFGAATTAMITTARKAVTLLLSYMIFTKPLTEQHGSGLL LIAMGIILKMVPIDYKPPSRSAPRNGKSHFKEEKSQADSRKGEGDEEKRPLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	0	1
AT1G17130			Family of unknown function (DU...		Potri.011G096100 [exp]	1.41	0.9081
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.002G141100 [exp]	2.23	0.8968	Pt-MSJ1.3
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	2.44	0.9081	HMGB915
AT3G22750			Protein kinase superfamily pro...		Potri.005G213200 [exp]	2.44	0.8991
AT2G38610			RNA-binding KH domain-containi...		Potri.019G132100 [exp]	3.87	0.8746
AT5G59050			unknown protein		Potri.009G038600 [exp]	4.58	0.8940
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	6.00	0.8970
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	6.32	0.8844
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.005G123200 [exp]	7.41	0.8833
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	8.48	0.8958

Compare expression of checked genes

Potri.001G111000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.