Plant FIBer expression Database

Potri.001G111100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11790 247 / 7e-77 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G120900
[exp]
602 / 0 AT4G11790 238 / 3e-73 Pleckstrin homology (PH) domain superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029606
[exp]
309 / 2e-100 AT4G11790 329 / 2e-108 Pleckstrin homology (PH) domain superfamily protein (.1)
Lus10006338
[exp]
276 / 2e-87 AT4G11790 324 / 3e-106 Pleckstrin homology (PH) domain superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G111100.4 pacid=42790150 polypeptide=Potri.001G111100.4.p locus=Potri.001G111100 ID=Potri.001G111100.4.v4.1 annot-version=v4.1
ATGAAAGGAGCGAAACGATTTGCCGCTTCAGACCCAGTCCCTGACTCGAATGACACGGCAAGGCTGATTGTGCAACACTCAATATGGTTGCAGTTAAGGA
ATAAGAGAATAATGGAAGGATCGCTATTTGATATTCATAGACCTGAACAATCTCAGCAACAATCGACTCCATTGCCACCGTTGGATGCAAAACGGGCTGC
TTCATCACAGCAGTATGTGAGAGCTCTCAATAACCAATTTGCCAGTTGGGTTCAAACGCAACTGAAGAACCATCCTGATGAACTCTGGGAAGATGGGATT
CGAGATTACCTTGCTCATGCTTCAAACATTATGGAGAAGTTTAGTGATGTTGTCAACTGGCTTAAAGCAAATGCTGTAAAAGGAGGGCCTGTTGCTGATT
CTCTTCGAGCTGAAAAGAAATTAGTGCCTGAAATAAAGAGTAATGAGAGCAAATTACTTCAAGAAAAAACCGGGTTTGCTTTACCGAGTACCAGTACAAG
CTTTACAAGTTCCTGGAGCTCTGGTGTCTTTTCTGCCAACCAAAGTTCTGGAGGAGTATCATCTAGTAGCCAAAGCTCTAGTTTATTCTCCAATGGTCAA
AGTTCTGGTTCATTATTATCGAACAATCCAAGTTCTGTTTTGTCCTCAAACAACCAAAGCTCTGGATTTTTCTCGAACATTCAAAGCCCTGGCCTCTTGT
CCAACAACCAAAGCTCTGGATTTTTCTCGAACATTCAAAGCCCTGGCCTCTTGTCCAACAATCAAAGCTCTGGAGCATTCTCCAACAGCCAGAGTTTAGG
AGCACTCTCCAACAGTCAAACACCTTTCTCCTTTAATCAAAGCTCTGGAACATTCTCCAACAGCCAAAGTTTAGGAGCACTCCCCAACACTCAAACATCT
TTCTTGTTTGGAGGCCAAAGCTCCATCCCCGCAAACCATAACACTGCAGATGATGCGGATGATGAAAATGAATTACAGCAACCTGGCAGTCCATCTGTGA
AGAAGTCTGAAGAGAAGGGTATTGTTACAGTCCATGAAGTCAAGTGCAAGCTCTATGTGAAGTCAAGTGATCCGGCAGATAAGGACACATGGAAAGATAA
GGGCCCAGGGCAGCTTTCCATCAAATGCAGAGAGGGGATTGGCAAGTCCACGAAAGAATCTAAACCAACCATTGTTGTTCGAAATGATGTGGGGAAAGTG
TTGCTTAATGCTTTGCTCTATCCAGGAATCAAGACAAATCCACAGAAGAATTCCCTTGTTGCAATATTTCACACTGCAGGTGATGATAGCGGCAATAATG
ATAGTGTTGTGGCACGTACTTTCTTAATTAGGACAAAAACAGAGGAGGATCGGAATAAGCTAGCGACAGCAATCCAAGAATACGCTCCCACTTCATGA
AA sequence
>Potri.001G111100.4 pacid=42790150 polypeptide=Potri.001G111100.4.p locus=Potri.001G111100 ID=Potri.001G111100.4.v4.1 annot-version=v4.1
MKGAKRFAASDPVPDSNDTARLIVQHSIWLQLRNKRIMEGSLFDIHRPEQSQQQSTPLPPLDAKRAASSQQYVRALNNQFASWVQTQLKNHPDELWEDGI
RDYLAHASNIMEKFSDVVNWLKANAVKGGPVADSLRAEKKLVPEIKSNESKLLQEKTGFALPSTSTSFTSSWSSGVFSANQSSGGVSSSSQSSSLFSNGQ
SSGSLLSNNPSSVLSSNNQSSGFFSNIQSPGLLSNNQSSGFFSNIQSPGLLSNNQSSGAFSNSQSLGALSNSQTPFSFNQSSGTFSNSQSLGALPNTQTS
FLFGGQSSIPANHNTADDADDENELQQPGSPSVKKSEEKGIVTVHEVKCKLYVKSSDPADKDTWKDKGPGQLSIKCREGIGKSTKESKPTIVVRNDVGKV
LLNALLYPGIKTNPQKNSLVAIFHTAGDDSGNNDSVVARTFLIRTKTEEDRNKLATAIQEYAPTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G11790 Pleckstrin homology (PH) domai... Potri.001G111100
[exp]
0 1
AT1G16280 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis tha... Potri.008G084700
[exp]
6.63 0.8132
AT5G05460 AtENGase85A Endo-beta-N-acetyglucosaminida... Potri.010G184300
[exp]
6.70 0.7898
AT5G58270 ABCB25, ATATM3,... STARIK 1, ARABIDOPSIS THALIANA... Potri.013G160500
[exp]
13.26 0.7744 STA1.2
AT1G68580 agenet domain-containing prote... Potri.010G126700
[exp]
15.49 0.7647
AT2G42450 alpha/beta-Hydrolases superfam... Potri.005G222000
[exp]
19.89 0.7844
AT2G36070 ATTIM44-2 translocase inner membrane sub... Potri.002G038300
[exp]
20.32 0.7840 Pt-ATTIM44.1
AT1G75400 RING/U-box superfamily protein... Potri.002G031600
[exp]
24.91 0.7505
AT5G22100 RNA cyclase family protein (.1... Potri.001G216400
[exp]
25.80 0.7624
AT5G13950 unknown protein Potri.002G237800
[exp]
28.87 0.8036
AT2G17250 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-b... Potri.009G168100
[exp]
32.86 0.7817

Potri.001G111100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.