Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63020 1442 / 0 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT2G40030 192 / 8e-49 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT5G60040 173 / 3e-43 NRPC1 nuclear RNA polymerase C1 (.1.2) AT4G35800 171 / 1e-42 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT3G57660 102 / 2e-21 NRPA1 nuclear RNA polymerase A1 (.1) AT3G46630 68 / 3e-12 Protein of unknown function (DUF3223) (.1) AT1G45230 66 / 2e-11 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) ATCG00180 59 / 2e-08 ATCG00180.1, RPOC1 DNA-directed RNA polymerase family protein (.1) AT5G62440 55 / 5e-08 Protein of unknown function (DUF3223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196900 [exp] 192 / 4e-49 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 181 / 1e-45 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G341900 [exp] 176 / 6e-44 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.005G107600 [exp] 173 / 5e-43 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.006G055300 [exp] 118 / 2e-26 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1) Potri.014G023200 [exp] 74 / 1e-14 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1) Potri.014G023400 [exp] 71 / 2e-13 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.002G125700 [exp] 66 / 1e-11 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G028300 [exp] 60 / 2e-09 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006339 [exp] 1675 / 0 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002955 [exp] 1651 / 0 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002748 [exp] 322 / 3e-89 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10016332 [exp] 193 / 2e-49 AT2G40030 1086 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10041856 [exp] 152 / 1e-36 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10015971 [exp] 143 / 6e-34 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10013536 [exp] 112 / 2e-24 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10028403 [exp] 102 / 2e-21 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1) Lus10011299 [exp] 100 / 1e-20 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1) Lus10040493 [exp] 99 / 2e-20 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00623 [poplar] [flax] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF04983 [poplar] [flax] RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04997 [poplar] [flax] RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF05000 [poplar] [flax] RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF11523 [poplar] [flax] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Potri.001G111300.2 pacid=42793244 polypeptide=Potri.001G111250.1.p locus=Potri.001G111300 ID=Potri.001G111300.2.v4.1 annot-version=v4.1 ATGGAGATTGATTTTTCTGAAGAACAGCAAGTGCCATCTGCTCTGATAACTGGGATGGCTTTTGGTGTTTTAACTGAGGCAGAAACGGAAAAACTTTCAG TTCTAAATATTGATGCTGTAAGTGAGGTCACTGATCCTAAGCTAGGACTTCCAAATCCATCTTCGCAGTGCTCCACATGTGGCTCTAGGGATTTAAAGTC GTGTGAAGGTCATTTTGGTGTTATTAATTTTCCATACACTATAGTACATCCATACTTTTTGTCTGAAGTTGTACAGATTCTGAATAAAATTTGCCCAGGA TGTAAATCTATTCGATTGGCCAAGGCGACAGAGTTGATAACTAAAGAAAATCCACAGAGAAAGGGCTGCAAATATTGTGCTGGAAACTCACTAGGTTGGT ATCCACCAATGAAATTCAAAGTCTCCTCCAAAGAAATTTTCAGAAAAACAGCAATTATAGCAGAGATCAGGGAAACATTGTCAAAAAAACCCCAGAAAGG ATTCAAGAAAATTCTGGCTGCTGACTATTGGGATATTTTTCCAAAAGATGAACAAGAAGAAGAGGAAGAAACCAATGCAAAACCAAACAGAAGAGTTCTA TCACATTCACAGGTTCGACATATGTTGAAAGATGTTGATCCAAATTTCATAAAACTGTCTATTTTGAAGACAGATACAATTTTCCTCAATTGTTTCCCAG TAACACCAAATTCTCATCGTGTGACAGAAGTTACACATGCATTTTCTAATGGGCAGCGATTGATCTTTGATGAACGGACTAGGGCTTACAAAAAAATGGT TGATTTCCGAGGGGTAGCAAATACGTTGAGTTTTCACGTCATGGACTGTCTGAAAACTTCTAAACTAAACCCAGACAAGTCAGGAAATATTGATCCTTGG ACTGCTCAACCTAAGAAAAGCAACGATTATGTTAACAACGCATCTGGTTTGAGATGGATCAAGGATGTCGTTCTAGGTAAACGGAATGATCATTCATTCC GTATGGTGATTGTAGGGGATCCTCATCTCCAGCTGCACGAAATTGGCATACCTTGTCATATTGCTGAGAGGTTGCAAATTTCAGAATCTCTCACAGCTTG GAATTGGGAGAAGTTGAATGCTTGTTTTGAGAAAAGCCGTTTTGAGAAGGGTGACATGCATGTTCGCAGAGAAGGGAATCTGGTTCGTGTTCGTCACATG AAAGAACTTCGTCTTGGCGACATCATTTATAGACCTCTTAATGATGGAGATACGGTCTTGATCAATAGGCCCCCATCCATACATCAACACTCCCTCATTG CTCTCTCTGTTAAAGTCCTTCCAGTGCCTTCGGTTCTTGCAATTAATCCCCTCTGTTGTCCCCCATTCCGTGCTGATTTCGATGGTGATTGTCTGCACGG CTATGTTCCTCAATCGGTCGACACCAGAGTTGAGCTAACTGAGCTTGTTTCCTTGGATAAGCAGTTAACTAATTGGCAGAGTGGCAGGAATCTTCTTTCT CTTAGTCAAGATAGTTTAACTGCTGCTCACTTGGTTTTGGAGGATGATGTTTTCTTAAGTTCTTTTGAGTTGCAGCAACTGCAAATGTTTCGACCTGAGC GGTTCCTGTTGCCAGCAGTTAAAGCTCCTTCAGCTAATGCTCTTGTTTGGACTGGAAAGCAGTTGATCAGCATGCTCCTACCTGTAGGATTTGATCATGA TTTTCCATCATGCAATGTTTGCATTCGAGATGGTGATCTTGTTTCTTCTGAAGGGTCCTTTTGGCTTTGGGACACTGATGGTAACCTATTCCAAAGCCTT GTGAAACATTGCCATGGTCAGGTTCTTGATTTCTTGTATGCAGCTCAGAGAGTTCTTTGTGAATGGTTATCAATGAGGGGCTTGAGTGTTTCTCTTTCTG ATCTGTACCTCTGTCCTGATTCTAACTCACGGAAAAACATGATGGATGAAATTTGGTATGGATTGCAAGATGCTGACTATGCATGCAACTTGAAACATTT GATGGTAGATTCCTGTCGGGATTTCCTCACTGGAAATAATGAAGAGGATCAGTGCAATGTTGAACGATTGCGTTTCCTTTCTGGATGCAGTGAAGAGGAT TATTGTGTTATGGCCTTTGATGGAGAGCGCTTGTGTTATGAGAAACAAAGATCTGCTGCTCTCAGTCAATCTTCTGTTGATGCTTTCAGGCTAGTGTTTC GGGATATTCAAAGTTTAGTATACAAATATGCTAGTCAGGACAACTCATTTCTGGCTATGTTTAAGGCAGGAAGCAAGGGTAATCTACTGAAATTAGTGCA GCATAGCATGTGTCTAGGCTTGCAACATGCACTGGCTTCATTGTCCTTCAGAATACCTCATCAACTCTCATGTGCTGGTTGGAATAAGCAAAAGGCTGAT GATGCTACTGAATCTGCCAAGCGCTACATCCCACATGCTGTTGTTGAAGGTTCTTTTCTATCTGGCTTGAATCCTATTGAGTGTTTTGTTCATTCAGTAA CAAGCCGAGATAGCTCTTTCAGTGACAATGCTGATCTTCCTGGGACTTTGTTTCGAAGGATGATGTTCTTCATGCGTGATTTGCATGGTGCATATGATGG AACAGTTAGAAATGCATACGGAAATCAGCTTGTTCAATTCTCTTACAATATTGATGACATGGATCCATCTGGTAGTGTTGATGAGATCAATAACAGTGAT GGGATAGCTGGTCGGCCAGTGGGTCCATTGGCTGCATGTGCCATCTCTGAAGCTGCATACAGTGCCCTGGATCAACCAATCAGCCTACTTGAAAAATCAC CTCTGCTGAATCTGAAGAATGTATTGGAGTGTGGTCTGAAAAGGAATAGTGCTCACCAAACTATGTCACTATTTTTGTCTGAGAAACTTGGGAGACAGAG GCATGGTTTCGAGTATGCAGCATTAGAAGTCCAGAACCATTTAGAGAGACTACTCTTTTCAGACATTGTTTCTTTTGTCAGGATAATCTTTTCCCCTCAA AGTGATGGCAGGATGCATTTTAGTCCTTGGGTTTGCCATTTTCATGTATACAAGGAAATTGTAAAGAAGAGAAGTCTAAAGGTGCACTACATAATTGACG CCCTTGAAAAGCAGTGTAAATCAAAAACTCGTTTTCCTAAAGTGCAAATAACAAGCAGGTACTGCACTGTAGCTGACACTTGGAAGGAAAAAAAAGAAAC ATTTTGCATAACTGTCACCATAGTTGAAACTTCCAAGAATGAATTCATAGAATTGGAGACAATTCAAGATCTAATGATTCCATTCCTTCTTGAAACAGTT ATAAAAGGATTCATGGAGATACAAAAGGTTGACATTTTGTGGAATGATAAGCCCAAGATACCAAAATCTCATAATCGTCTCCGTGGTGAGCTCTTCTTGA GGGTTCACATGTCAAGAGGATCTGACAAAACAAGACTCTGGAACCAACTTATGGATGACTGTCTCTCAATAATGGATCTTATTGACTGGGCTCGTAGTCA TCCAGATAACATACATGAATGCTGTTTGGCTTATGGCATAGATGCTGGATGGAAATTTTTTCTCAATAATTTGCAGTCTGCAATGTCTGATGTTGGCAAG ACAGTACTTCCTGAACATTTGCTTCTTGTTGCAAATTGTCTCTCAGTTACTGGGGAGTTTGTTGGCCTAAATGCAAAAGGCTTGAAACGACAAAGAGAGC ATGCTTCTGTCTCAACGCCTTTTGTGCAAGCATGCTTTTCTAATCCTGGTGATTGCTTTATCAGGGCTGCTAAGGCTGGAGTGGTGGATGATCTCCAGGG AAGCATAGATGCTTTGGCATGGGGAAAGGTTCCTGCCATTGGGACTGGACAATTTGATATTGTATACTCTGGAAAGGGTTTAGAGTTTTCAAAGCCTGTT GATGTGTATAACCTTCTGGGAAGCCAAATGATATCTACTGAGCAGAATACTGAGTTTGGAGTACTGGATGCTCAAATCTATAAATCTGATAAATGTGGAG CTCAGTTTCTGCACAAGTTTGGTGGTTGTGGCCCTAAAGGATTTAAAGTAAAGGAGGGTATACCAAGATCATTCTTACGACGTCTTCTTACATATGATGA CATTCAACGGATGTCCTATACAGTGAGAAAAATCTTGAATAAGTACTCTGTAGACCAACAATTAAATGAGAGTGACAAGTCTGTTTTGATGATGACTTTA TATTTCCATCCTCGAAGAGATGAGAAGATTGGAATTGGAGCCAAAGACATCAAGGTTATAAACCACCCAGAATATCAAGATACACGCTGCTTTTCACTGG TTAGAACAGATGGGACGATAGAGGACTTCTCATATCGCAAATGTCTCCATAACGCTCTTGAGATCATTGCTCCTCAAAGGGCCAAAAGGTATTGTGAAAA ATATTTGACATCTAAGGTCTCTGCAACAGACAACAGTGGGTGTACTGACTTGCCTTTGGATAACTAA
AA sequence Show only first row Show all	>Potri.001G111300.2 pacid=42793244 polypeptide=Potri.001G111250.1.p locus=Potri.001G111300 ID=Potri.001G111300.2.v4.1 annot-version=v4.1 MEIDFSEEQQVPSALITGMAFGVLTEAETEKLSVLNIDAVSEVTDPKLGLPNPSSQCSTCGSRDLKSCEGHFGVINFPYTIVHPYFLSEVVQILNKICPG CKSIRLAKATELITKENPQRKGCKYCAGNSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSKKPQKGFKKILAADYWDIFPKDEQEEEEETNAKPNRRVL SHSQVRHMLKDVDPNFIKLSILKTDTIFLNCFPVTPNSHRVTEVTHAFSNGQRLIFDERTRAYKKMVDFRGVANTLSFHVMDCLKTSKLNPDKSGNIDPW TAQPKKSNDYVNNASGLRWIKDVVLGKRNDHSFRMVIVGDPHLQLHEIGIPCHIAERLQISESLTAWNWEKLNACFEKSRFEKGDMHVRREGNLVRVRHM KELRLGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQLTNWQSGRNLLS LSQDSLTAAHLVLEDDVFLSSFELQQLQMFRPERFLLPAVKAPSANALVWTGKQLISMLLPVGFDHDFPSCNVCIRDGDLVSSEGSFWLWDTDGNLFQSL VKHCHGQVLDFLYAAQRVLCEWLSMRGLSVSLSDLYLCPDSNSRKNMMDEIWYGLQDADYACNLKHLMVDSCRDFLTGNNEEDQCNVERLRFLSGCSEED YCVMAFDGERLCYEKQRSAALSQSSVDAFRLVFRDIQSLVYKYASQDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRIPHQLSCAGWNKQKAD DATESAKRYIPHAVVEGSFLSGLNPIECFVHSVTSRDSSFSDNADLPGTLFRRMMFFMRDLHGAYDGTVRNAYGNQLVQFSYNIDDMDPSGSVDEINNSD GIAGRPVGPLAACAISEAAYSALDQPISLLEKSPLLNLKNVLECGLKRNSAHQTMSLFLSEKLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRIIFSPQ SDGRMHFSPWVCHFHVYKEIVKKRSLKVHYIIDALEKQCKSKTRFPKVQITSRYCTVADTWKEKKETFCITVTIVETSKNEFIELETIQDLMIPFLLETV IKGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCLSIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGK TVLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGKVPAIGTGQFDIVYSGKGLEFSKPV DVYNLLGSQMISTEQNTEFGVLDAQIYKSDKCGAQFLHKFGGCGPKGFKVKEGIPRSFLRRLLTYDDIQRMSYTVRKILNKYSVDQQLNESDKSVLMMTL YFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEIIAPQRAKRYCEKYLTSKVSATDNSGCTDLPLDN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Potri.001G111300 [exp]	0	1
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Potri.006G119600 [exp]	2.00	0.8727
AT1G78940			Protein kinase protein with ad...		Potri.004G170742 [exp]	3.46	0.8708
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Potri.001G078600 [exp]	3.87	0.8713
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.001G135300 [exp]	5.47	0.8392
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	6.32	0.8559
AT5G56890			Protein kinase superfamily pro...		Potri.003G039100 [exp]	7.14	0.8301
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	9.64	0.8148	ARF6.4
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	12.96	0.8428
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.006G132400 [exp]	13.85	0.8141
AT4G03260			Outer arm dynein light chain 1...		Potri.013G150300 [exp]	16.15	0.8394

Compare expression of checked genes

Potri.001G111300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.