Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22990 1087 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT4G11810 1063 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT1G63010 1022 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G120600 [exp] 1246 / 0 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.014G078000 [exp] 1011 / 0 AT4G22990 978 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.014G061400 [exp] 48 / 8e-06 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.002G143900 [exp] 48 / 1e-05 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006340 [exp] 1091 / 0 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10009314 [exp] 887 / 0 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 872 / 0 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10002956 [exp] 759 / 0 AT4G22990 797 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.001G111400.3 pacid=42792952 polypeptide=Potri.001G111400.3.p locus=Potri.001G111400 ID=Potri.001G111400.3.v4.1 annot-version=v4.1 ATGGTTGCCTTTGGGAAAAAGCTGAAGGAAAGACAAATTCAAGAATGGCAAGGATACTATATCAACTACAAATTAATGAAGAAGAAAGTTAGACAGCATG CTCAACAAATTGAAGTTGGAACACAGGATCGCCGGCATGTACTCAAGGATTTCTCAAGAATGTTGGATAATCAGATAGAGAAGATTGTTCTTTTTCTCTT GGAACAACAAGGGCTGCTTGCAAGCAGGATAGCCGAGCTTAATGAGCAGCAGGAGGCTCTTCAGCAGCAGCCAGATATATTTGAAATATCCCAGTTACGA GAAGCTTATAGAGAAGTGGGACGAGATCTTTTAAAGCTTCTCTTTTTTATTGAGATAAACGCCATTGGTCTTCGTAAGATACTGAAGAAGGTTGATAAAC GGTTTGGATATAGATTCACTGATTACTATGTCAAAACCCGTGCCAATCATCCCTACTCTCAGCTGCAGCAAGTGTTCAAGCACGTGGGTCTAGGAGCTGT TGTTGGAGCCATATCACGCAATCTGCATGAACTTCAGGAACATCAGGGAAGCTACTTATCGATTTATGATCAGCCTGCTCTTCCCTTCCAGGATCCTGTT GTTGATTCAATGAAAGCAGCAGTTGACAGGCTAACCCACTCAACAAACTTCCTCAACTTCTTGGCACAACATGCACTCATTATGCAAGAAGAGCTACCGA CTTTTGAGGAACCTGTTGATGATCAAAAATACCATTTTATATCACTTCTCTTAAACTTAGTCAACACATTTCTTTATATGGTCAATACATATATTATTGT ACCTACAGCAGATGACTACTCTATGAGCCTTGGAGCCGCAGCAACAGTTTGTGGTATTGTGATTGGATCAATGGCTGTTGCACAGGTGTTTTCTTCAGTA TATTTTAGTGCTTGGTCAAATAAGTCATACTTCAGACCTCTTGTATTCAGCAGCATTGTTCTTTTCATCGGAAATGCAATGTATGCTTTGGCATATGACT TTAATTCAATAGCTGTTCTCTTACTTGGCCGTGTTTTCTGTGGATTGGGTTCTGCCAGAGCTGTTAACCGGCGCTACATCAGTGATTGTGTACCGCTTAA ACTACGCATGCAGGCATCAGCAGGTTTTGTTAGTGCCAGTGCTCTTGGAATGGCTTGTGGTCCTGCTCTTGCTGGCTTACTACAAACTAACTTTAAACTT TACAAGCTGACATTCAATCAAGACACTTTGCCAGGCTGGGTTATGTCTCTGGCCTGGCTTATATATCTAGTATGGCTGTGGATCTCATTTAAAGAACCTT CTCATGTGACTGAAGAGAGCAGTGCAGCGCAGGAATCCACTGCTGAACCAGTAGAAAATGATGTTCTCGAGAAAGGTCTTAAACAAGCATTGCTATTGAG TTCAGAAGACAAGCGAGTGACTGAAGATGGTGATGGAGAATTTGATGGCAGTGATGAAGCTCCAGAGGAGGCTCGGGGACCAGCTACATCAATTGGATCA GCATATAGGCTACTTACACCCTCTGTAAAGGTTCAGCTGTTAATATATTTCATGCTCAAATATGCAATGGAGGTTTTACTCTCAGAATCTAGTGTCGTTA CCACATACTACTTCAGTTGGTCAACAAGCTCGGTGGCCATTTTTCTTGCGTGCCTAGGGCTAACGGTCCTTCCAGTGAACATAGTTGTTGGAAGCTACAT TAGTAACATGTTTGAAGATAGGCAAATTTTATTAGCATCAGAAATTATGGTTTGCGTAGGAATACTGCTGAGCTTCCATATAATAAGCCCATACACTGTG CCACAGTATGTCTGTTCTGGACTCATCTTGTTTGTTTCTGCAGAAGTACTTGAAGGCGTCAACTTGTCACTGCTCTCTCGAGTCATGTCATCCAGGCTTT CCCGCGGAACCTATAACGGTGGACTCCTCTCAACAGAAGCTGGGACATTAGCCCGTGTAGTTGCAGACGGCACAATTACGCTGGCTGGGTACTTGGGTGA GAGTAAGCTCTTAAACGTCACTCTTCTTCCTTCACTGGTGATTTGCATAGCCTCTATTGTTGCCACCTGCTTTACTTACAACTCTCTCTATTGA
AA sequence Show only first row Show all	>Potri.001G111400.3 pacid=42792952 polypeptide=Potri.001G111400.3.p locus=Potri.001G111400 ID=Potri.001G111400.3.v4.1 annot-version=v4.1 MVAFGKKLKERQIQEWQGYYINYKLMKKKVRQHAQQIEVGTQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRIAELNEQQEALQQQPDIFEISQLR EAYREVGRDLLKLLFFIEINAIGLRKILKKVDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQEHQGSYLSIYDQPALPFQDPV VDSMKAAVDRLTHSTNFLNFLAQHALIMQEELPTFEEPVDDQKYHFISLLLNLVNTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGSMAVAQVFSSV YFSAWSNKSYFRPLVFSSIVLFIGNAMYALAYDFNSIAVLLLGRVFCGLGSARAVNRRYISDCVPLKLRMQASAGFVSASALGMACGPALAGLLQTNFKL YKLTFNQDTLPGWVMSLAWLIYLVWLWISFKEPSHVTEESSAAQESTAEPVENDVLEKGLKQALLLSSEDKRVTEDGDGEFDGSDEAPEEARGPATSIGS AYRLLTPSVKVQLLIYFMLKYAMEVLLSESSVVTTYYFSWSTSSVAIFLACLGLTVLPVNIVVGSYISNMFEDRQILLASEIMVCVGILLSFHIISPYTV PQYVCSGLILFVSAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVVADGTITLAGYLGESKLLNVTLLPSLVICIASIVATCFTYNSLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22990			Major Facilitator Superfamily ...		Potri.001G111400 [exp]	0	1
AT1G22540			Major facilitator superfamily ...		Potri.013G107050 [exp]	1.41	0.8191
AT2G20010			Protein of unknown function (D...		Potri.018G085900 [exp]	18.97	0.6474
AT1G73760			RING/U-box superfamily protein...		Potri.015G043900 [exp]	20.61	0.6558
AT4G28690			unknown protein		Potri.002G255400 [exp]	22.80	0.6494
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.016G110800 [exp]	29.24	0.5742
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.010G180600 [exp]	29.66	0.6455
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Potri.001G167200 [exp]	30.74	0.6092
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.010G100200 [exp]	31.74	0.6252	NTR1.3
AT3G30390			Transmembrane amino acid trans...		Potri.017G106300 [exp]	45.59	0.5944
AT2G44140			Peptidase family C54 protein (...		Potri.007G147100 [exp]	55.49	0.6434

Compare expression of checked genes

Potri.001G111400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.