Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12570 773 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 691 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 667 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 618 / 0 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 600 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 485 / 2e-166 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 392 / 4e-131 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 380 / 4e-126 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G039000 [exp] 658 / 0 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 657 / 0 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 552 / 0 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 496 / 8e-171 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 416 / 1e-139 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 409 / 6e-137 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 402 / 4e-134 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G249501 [exp] 90 / 3e-21 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024487 [exp] 861 / 0 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10002957 [exp] 841 / 0 AT1G12570 701 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10017827 [exp] 837 / 0 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10031663 [exp] 686 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10027406 [exp] 682 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015012 [exp] 659 / 0 AT5G51950 667 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015623 [exp] 657 / 0 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10038891 [exp] 656 / 0 AT5G51950 668 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10003176 [exp] 644 / 0 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10037640 [exp] 641 / 0 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00732 [poplar] [flax] GMC_oxred_N GMC oxidoreductase CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.001G111500.1 pacid=42792541 polypeptide=Potri.001G111500.1.p locus=Potri.001G111500 ID=Potri.001G111500.1.v4.1 annot-version=v4.1 ATGGCTCTTGGATGGTGCAGATTCTTTGGTGCTTGTTTTATAGGAATTCTCTTCTTTCATGGCTTTTGCGCCTGCGATAGAGCTCCATATTACTCTTTCA TGCTCAATGCAACTTCGGCTCCAACAATATCATACTACGACTACATAATTGTGGGTGGTGGAACCGCTGGCTGTCCTTTAGCTGCCACGCTCTCACAAAA CGCTAGCGTTTTGCTCCTAGAACGCGGTGGCTCACCCTATGGCAATCCTAACATTACCAACCTAGCAAAATTTGGTGCTGCGCTGTCCGACCCCTCTCCT ACCTCCCCCTCTCAACGTTTCATTTCTGAAGATGGCGTGATAAATGCTCGTGCCCGCGTACTAGGCGGTGGGAGCTGCCTAAATGCTGGATTCTATACCC GTGCCTCTCCGGAATATATAAGAGCTGCAGGGTGGGACGGTCGGTTGGCGAATGAGTCGTACCAATGGGTGGAGCGGAGAGTGGCGTTCGAGCCGCAAAT GGGGCCATGGCAATCGGCTGTGAGGGATGGGCTGCTAGAGGCCGGAGTGCTGCCAAACAATGGATTCACATACGATCATATTAAGGGGACTAAAGTTGGT GGAACAATCTTTGATCGAGCTGGGAATAGACATACTGCTGCTGATTTATTGGAGTATGCCAATCCTGGTGGGCTTACCGTCCTTTTGCATGCTACTGTAT ACAAGATCTTGTTTGCAACTAAAGCAAGACCAAAACCAGTGGCTCATGGAGTGGTATACAGAGATGCATCAGGGGCAAAGCACAGAGCCTACCTAAAGAG AGGGTTAAAAAATGAAATTATCATATCATCTGGTGCCCTAGGAAGCCCACAGCTCTTGATGTTGAGCGGAGTGGGCCCTGCACAGCAACTTCGGGCCCAC AATATTACAGTTGTGTTGGATCAGCCCATGGTTGGCCAACTCATGTCTGATAACCCCATGAATGCCATTTTCGTCCCTTCTCCTCTCCCAGTTGAGGTTT CACTTATTCAAGTTGTTGGCATCACTCAATTTGGTAGCTACATTGAAGCTGCAAGCGGTGAAAATTTTGGTGGTTCTCCTCAAAGAGACTACGGGATGTT CTCTCCTAAGATTGGCCAGCTCTCAACAGTGCCACCAAAACAGAGGACCCCAGAAGCCCTAGCCAAGGCTATTGAGCTAATGAACAACTTGGACCAACAA GCTTTCCAAGGTGGATTCATTCTTGAAAAAATTATGGGTCCAATTTCCACCGGTCATTTGGAGCTAAGAACACGCCACCCTGAGGACAATCCATCAGTTA CCTTCAACTACTTCAAAGAACCCCAAGACTTGCAAAGATGTGTAGAGGGCATTTCAACTATAGAGAAAGTGATCGATTCGAGGCCTTTCTCTAAGTTCAG GTTTGATTATTTGTCGGTGCCACAGCTGCTAAACATGACAGCAAGTGCCCCAGTAAATCTGTTGCCTAGACATTACAATTCCTCACAGTCACTAGAAGAT TTCTGCAAGGACACAGTCATGACCATATGGCATTATCATGGAGGTTGCCAAGCTGGTAGTGTTGTTGACCATGATTACAAGGTTATGGGTGTGGATGCGC TAAGGGTTATTGATGGGTCCACCTTCAATGTCTCTCCTGGGACTAACCCTCAGGCCACTGTCATGATGCTTGGAAGGTACATGGGAGTCAATATTTTGAA GGAGAGACTTGCAAAAGAAGATTTGGCAAATTAA
AA sequence Show only first row Show all	>Potri.001G111500.1 pacid=42792541 polypeptide=Potri.001G111500.1.p locus=Potri.001G111500 ID=Potri.001G111500.1.v4.1 annot-version=v4.1 MALGWCRFFGACFIGILFFHGFCACDRAPYYSFMLNATSAPTISYYDYIIVGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLAKFGAALSDPSP TSPSQRFISEDGVINARARVLGGGSCLNAGFYTRASPEYIRAAGWDGRLANESYQWVERRVAFEPQMGPWQSAVRDGLLEAGVLPNNGFTYDHIKGTKVG GTIFDRAGNRHTAADLLEYANPGGLTVLLHATVYKILFATKARPKPVAHGVVYRDASGAKHRAYLKRGLKNEIIISSGALGSPQLLMLSGVGPAQQLRAH NITVVLDQPMVGQLMSDNPMNAIFVPSPLPVEVSLIQVVGITQFGSYIEAASGENFGGSPQRDYGMFSPKIGQLSTVPPKQRTPEALAKAIELMNNLDQQ AFQGGFILEKIMGPISTGHLELRTRHPEDNPSVTFNYFKEPQDLQRCVEGISTIEKVIDSRPFSKFRFDYLSVPQLLNMTASAPVNLLPRHYNSSQSLED FCKDTVMTIWHYHGGCQAGSVVDHDYKVMGVDALRVIDGSTFNVSPGTNPQATVMMLGRYMGVNILKERLAKEDLAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12570			Glucose-methanol-choline (GMC)...		Potri.001G111500 [exp]	0	1
AT2G10940			Bifunctional inhibitor/lipid-t...		Potri.006G065500 [exp]	1.00	0.9977
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126900 [exp]	2.00	0.9965
AT1G55230			Family of unknown function (DU...		Potri.001G009000 [exp]	3.74	0.9919
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127100 [exp]	4.47	0.9958
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.003G019900 [exp]	4.89	0.9925
AT3G05470			Actin-binding FH2 (formin homo...		Potri.005G026300 [exp]	5.00	0.9957
AT2G14900			Gibberellin-regulated family p...		Potri.001G297700 [exp]	5.47	0.9928
AT4G08910			unknown protein		Potri.002G231400 [exp]	6.92	0.9946
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Potri.003G172400 [exp]	7.34	0.9929
AT2G18969			unknown protein		Potri.018G090200 [exp]	7.48	0.9940

Compare expression of checked genes

Potri.001G111500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.