Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63000 535 / 0 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) AT1G78570 503 / 2e-176 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT3G14790 457 / 2e-158 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 455 / 1e-157 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT2G28760 49 / 2e-06 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 49 / 3e-06 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 45 / 3e-05 UXS5 UDP-XYL synthase 5 (.1.2) AT3G62830 44 / 6e-05 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 44 / 6e-05 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 43 / 0.0001 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G120000 [exp] 605 / 0 AT1G63000 532 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.011G103700 [exp] 506 / 2e-177 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 501 / 9e-176 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 495 / 2e-173 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.008G053100 [exp] 48 / 5e-06 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 47 / 1e-05 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.010G207200 [exp] 47 / 1e-05 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.014G129200 [exp] 45 / 6e-05 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G204400 [exp] 44 / 6e-05 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006719 [exp] 549 / 0 AT1G63000 531 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10014147 [exp] 548 / 0 AT1G63000 530 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10005560 [exp] 501 / 5e-176 AT1G78570 1123 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10042497 [exp] 501 / 2e-175 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10013695 [exp] 499 / 2e-175 AT1G78570 1005 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10038146 [exp] 499 / 5e-175 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10010942 [exp] 475 / 1e-165 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10007355 [exp] 324 / 8e-107 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10020776 [exp] 313 / 1e-102 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10031389 [exp] 72 / 9e-16 AT1G78570 84 / 2e-20 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF04321 [poplar] [flax] RmlD_sub_bind RmlD substrate binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G112000.1 pacid=42790646 polypeptide=Potri.001G112000.1.p locus=Potri.001G112000 ID=Potri.001G112000.1.v4.1 annot-version=v4.1 ATGGGATTCGAATCTTCGAACGGCACAGCATCACCAAAACTGCTCAAATTCCTCATCTACGGACGTACTGGCTGGATCGGTGGACTCTTAGGCAAGCTTT GCCAATCCCAGGGCATCGACTTCACCTATGGTTCCGGTCGCCTTGAAAACCGACCCTCCCTCGAAGCCGACCTGGTTGCCGTTAATCCCACTCATGTTTT CAACGCTGCCGGCGTTACTGGCAGGCCTAACGTCGATTGGTGCGAATCCCATAAAGTCGAGACCATACGAACCAATGTGGTCGGCACACTGACGTTGGCT GACCTTTGCAGGGAGAAAGGTTTGGTCTTGATTAATTATGCTACGGGCTGTATCTTTGAGTATGATTCGAGCCATCCTCTCGGGTCGGGTATTGGGTTCA AGGAGGAGGATACTCCGAACTTTATCGGTTCTTTCTATTCCAAGACTAAGGCCATGGTAGAGGATTTGCTCAGGAATTATGAAAATGTTTGCACATTGCG TGTCAGAATGCCCATTTCATCTGATTTAGCCAACCCTCGCAATTTCATCACAAAGATCACTCGATATGAGAAGGTAGTGGACATTCCAAACTCGATGACA ATCTTGGATGAACTCCTTCCCATCTCCATCGAGATGGCAAAGAGAAACCTTACTGGGATCTATAACTTTACAAATCCTGGAGTGGTTAGTCACAATGAGA TTTTAGAAATGTATCGGGATTACATTGACCCCGATTTCACATGGAAAAACTTCACTCTTGAGGAGCAAGCAAAGGTAATAGTTGCCCCAAGGAGCAACAA TGAGCTTGATACTGCCAAATTGAAGCAGGAATTCCCTGAGCTCTTGCCAATAAAAGAGTCCCTTATCAAGTATGTCTTCAAGCCAAATCAGAAGACAGCT GCTGCTTGA
AA sequence Show only first row Show all	>Potri.001G112000.1 pacid=42790646 polypeptide=Potri.001G112000.1.p locus=Potri.001G112000 ID=Potri.001G112000.1.v4.1 annot-version=v4.1 MGFESSNGTASPKLLKFLIYGRTGWIGGLLGKLCQSQGIDFTYGSGRLENRPSLEADLVAVNPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLA DLCREKGLVLINYATGCIFEYDSSHPLGSGIGFKEEDTPNFIGSFYSKTKAMVEDLLRNYENVCTLRVRMPISSDLANPRNFITKITRYEKVVDIPNSMT ILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPDFTWKNFTLEEQAKVIVAPRSNNELDTAKLKQEFPELLPIKESLIKYVFKPNQKTA AA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.001G112000 [exp]	0	1
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Potri.008G084400 [exp]	2.23	0.9017
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Potri.008G043800 [exp]	4.24	0.8684
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.012G036200 [exp]	5.00	0.8692
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Potri.008G005000 [exp]	5.19	0.8759
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.005G085100 [exp]	7.21	0.8508
AT5G08690			ATP synthase alpha/beta family...		Potri.008G126600 [exp]	14.42	0.8550	ATP.2
AT3G52930			Aldolase superfamily protein (...		Potri.018G090100 [exp]	14.62	0.8802
AT4G34720		ATVHA-C1, AVA-P...	VACUOLAR H+-PUMPING ATPASE C1,...		Potri.009G125000 [exp]	16.91	0.8519	Pt-AVAP5.2
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Potri.001G120900 [exp]	17.60	0.8638	Pt-KAS.2
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Potri.015G034600 [exp]	17.66	0.7971	ATLCB1.2

Compare expression of checked genes

Potri.001G112000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.