Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42010 1307 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G11850 1263 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11840 1247 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G00240 1238 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 1212 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G35790 884 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT3G15730 707 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 698 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 697 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 510 / 9e-170 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074700 [exp] 1308 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 1287 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.003G015000 [exp] 962 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 924 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 917 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 873 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 863 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.018G131200 [exp] 720 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.006G253900 [exp] 703 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006718 [exp] 1358 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 1347 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006819 [exp] 1287 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 1282 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10026375 [exp] 1200 / 0 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10042282 [exp] 970 / 0 AT2G42010 940 / 0.0 phospholipase D beta 1 (.1) Lus10001293 [exp] 912 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 912 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10026377 [exp] 898 / 0 AT2G42010 838 / 0.0 phospholipase D beta 1 (.1) Lus10041855 [exp] 869 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Potri.001G112100.4 pacid=42790750 polypeptide=Potri.001G112100.4.p locus=Potri.001G112100 ID=Potri.001G112100.4.v4.1 annot-version=v4.1 ATGGCTCAAATTGATCATACATTCTCCTTCGGGGGCTCACACCATAATCAGGGTCAACAAGCAGTGCCATTTCCCACCAATAAAGGGTCTTTGAAAGTCT TGCCCCTGCATGGCAACTTAGAAATACGGGTTAAGGAGGCTAAAAACCTTCCTAACTTAGATGTTTTTCATAAGACTTTAGGGGATATGTTTTCGAAATT CCCTGTGAAGTTCGGCAATAAGATTGAAGGGCATGTAGGTAGTAAGATCACCAGTGATCCATATGTCACTATTTCGGTATCTGGTGCTGTAATTGGGAGG ACTTTTGTGATCAAGAATAATGAGAACCCGGTGTGGATGCAGCATTTTGATGTTCCTGTTGCGCATCATGCTGCAGAGGTTCATTTTTCTGTCAAAGATG ATGATATCGTTGGCTCACAAATGATGGGTGCTGTTGGGATCCCAGTAGAGCAGTTAATCTCAGGCATGAAAATTGAGGGAATTTTCCCGGTTCTTGGTTC TAATGGGAAGCCCTGTAAGGCTGGAGCTGCTTTGAGTTTATCAATTCAGTTTACTCCAGTGGAGAAAATGGCAATTTATCAGCAGGGAGTGCGTTCAGGT CCTGATTATAATGGGGTTCCTGGCACATATTTTCCTATTAGGAGAGGAGGTAAAGTTACTCTCTATCAAGACGCTCATGTTCATGATGGTTGCCTTCCTG ATTTGAAGCTTGATGATCATGTTCAGTTTGAGCATAGAAGTTGCTGGGATGACATCTTTAATGCTATCAGCCAGGCTCGGCGATTGATTTACATTACCGG ATGGTCTGTCAACTATAAGGTTAAATTGGTACGGGGTGGTAATGACGGCAGAGATTGTACATTAGGAGATCTTCTCAAGACCAAGTCTCAAGAAGGAGTT AGAGTGCTGCTTCTCGTATGGGATGATCCAACCTCCAGGAGTGTTTTGGGATTCAAAACGGAAGGGGTCATGCAAACCAGTGATGAGGAGACTCGCCGTT TTTTCAAGCACTCGTCAGTACAAGTGCTACTCTGCCCTCGATCTGCTGGAAAGGGACACAGCTTTATCAAAAAGCAGGAAACTGAAACCATCTATACACA CCACCAGAAAACAGTGATAGTGGATACTGATGCAGGTCACTTTAGAAGAAAGATCACAGCATTCGTTGGAGGTCTTGATTTATGCAAGGGTCGATATGAT ACTCCACAGCATCCTCTTTTTAGGACATTGCAGACAGTGCACAAAGATGACTTTCGTAACCCTAATTTCACGGAGCCAGCTGGTGCCGGTTGTCCAAGAC AACCATGGCATGATTTGCACTGTCAAATTGATGGTCCAGCAGCCTATGACGTCCTCACCAATTTTGAAGAGCGTTGGTTGAAGGCATCAAAACCCCGTGG GATGCAAAAATTGAAGGCATCATTCGATGATGCATTACTGAAGCTTGAAAGAATTGATGAAATATTGGGGATAGCAGAACTTCCATCCCTTGCCGAGGAT GATCCAGAGGCTTGGAATGTTCAGGTTTTCCGTTCTATTGATTCCAATTCTGTGAAAGGCTTTCCAGATGACCCGAGAGATGCAACTAGCATGAACTTGG CATGTGGGAAGAATGTAATTATAGACATGAGTATACACACCGCATATGTCAATGCAATCCGTGCTGCCCAACATTTCATCTACATTGAGAACCAGTATTT TCTAGGTTCATCATATAATTGGGATTCTCACAAAGACTTAGGAGCAAACAACTTAATACCCATGGAAATTGCCCTTAAAATTGCTGACAAAATAAGAGCA CATGAGAGGTTTTCTGCATATATTCTTATCCCAATGTGGCCAGAGGGAGCTCCTACAAGCGCACCTATACAGAGGATTCTCTTTTGGCAGCATAAAACAA TGCAAATGATGTATGAAACAATTTACAAGGCCTTGGTGGAGGTTGGACTGGAAAATACATATGAGCCACAAGACTATTTAAATTTCTTCTGCCTTGGCAA TCGCGAGGCGTTAGATAGGGAGAATGGTGTGCAAAGCTCTACTCCTGGAAACACTCCTCAGGCACGGAGTGAGAAGAGCAGACGCTTTATGATTTACATT CACTCTAAAGGAATTATAGTGGATGATGAATATGTAATATTGGGATCTGCGAACATCAATCAACGGTCCATGGAGGGCACCAGAGATACTGAGATAGCAA TGGGAGCATATCAACCCAACCATACCTTGGCAAGGAAAAACTCTCGTTCACATGGGCAGGTCTATGGATATAGAATGTCACTATGGGCAGAGCACATAGG AGAGCTTGAGGAGTGTTTTGAGCAACCAGAGACTATTGAATGTGTGAGACGTGTAAGGTCCCTTGGTGAACAGAACTGGAGACAGTATGTAGCTGATGAG GTAACAGAAATGAAGGGTCACCTTCTGAAGTATCCAGTTGAAGTTGACAGAACAGGCAAGGTCAAGGCTCTCCATGGCAGTGAAAAATTCCCAGACGTTG ATGGTAACATTCTAGGGTCTTTCATAGCCATTCAAGAAAATCTCACTATTTGA
AA sequence Show only first row Show all	>Potri.001G112100.4 pacid=42790750 polypeptide=Potri.001G112100.4.p locus=Potri.001G112100 ID=Potri.001G112100.4.v4.1 annot-version=v4.1 MAQIDHTFSFGGSHHNQGQQAVPFPTNKGSLKVLPLHGNLEIRVKEAKNLPNLDVFHKTLGDMFSKFPVKFGNKIEGHVGSKITSDPYVTISVSGAVIGR TFVIKNNENPVWMQHFDVPVAHHAAEVHFSVKDDDIVGSQMMGAVGIPVEQLISGMKIEGIFPVLGSNGKPCKAGAALSLSIQFTPVEKMAIYQQGVRSG PDYNGVPGTYFPIRRGGKVTLYQDAHVHDGCLPDLKLDDHVQFEHRSCWDDIFNAISQARRLIYITGWSVNYKVKLVRGGNDGRDCTLGDLLKTKSQEGV RVLLLVWDDPTSRSVLGFKTEGVMQTSDEETRRFFKHSSVQVLLCPRSAGKGHSFIKKQETETIYTHHQKTVIVDTDAGHFRRKITAFVGGLDLCKGRYD TPQHPLFRTLQTVHKDDFRNPNFTEPAGAGCPRQPWHDLHCQIDGPAAYDVLTNFEERWLKASKPRGMQKLKASFDDALLKLERIDEILGIAELPSLAED DPEAWNVQVFRSIDSNSVKGFPDDPRDATSMNLACGKNVIIDMSIHTAYVNAIRAAQHFIYIENQYFLGSSYNWDSHKDLGANNLIPMEIALKIADKIRA HERFSAYILIPMWPEGAPTSAPIQRILFWQHKTMQMMYETIYKALVEVGLENTYEPQDYLNFFCLGNREALDRENGVQSSTPGNTPQARSEKSRRFMIYI HSKGIIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPNHTLARKNSRSHGQVYGYRMSLWAEHIGELEECFEQPETIECVRRVRSLGEQNWRQYVADE VTEMKGHLLKYPVEVDRTGKVKALHGSEKFPDVDGNILGSFIAIQENLTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.001G112100 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385600 [exp]	1.00	0.9467
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.005G057800 [exp]	1.41	0.9410
AT4G29050			Concanavalin A-like lectin pro...		Potri.003G196600 [exp]	3.16	0.9020
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.006G115000 [exp]	4.89	0.8978
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143433 [exp]	4.89	0.9336
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	6.00	0.9062
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	8.77	0.8907
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	11.40	0.8878
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	12.00	0.8892	Pt-WRKY11.1
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261500 [exp]	12.40	0.8674

Compare expression of checked genes

Potri.001G112100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.