Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	KNAT7.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62990 466 / 1e-167 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT5G25220 381 / 5e-132 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT5G11060 378 / 3e-131 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT4G32040 346 / 1e-118 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G70510 123 / 5e-33 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT1G23380 113 / 6e-29 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT4G08150 102 / 2e-24 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 98 / 5e-23 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT2G27990 61 / 3e-10 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT1G75430 58 / 1e-09 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G259400 [exp] 388 / 2e-134 AT5G25220 539 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G022700 [exp] 377 / 3e-130 AT5G25220 513 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G114100 [exp] 354 / 2e-122 AT5G25220 441 / 6e-155 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G190000 [exp] 344 / 2e-118 AT5G25220 434 / 4e-152 KNOTTED1-like homeobox gene 3 (.1.2) Potri.005G014200 [exp] 137 / 3e-38 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 131 / 5e-36 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.015G079100 [exp] 113 / 8e-29 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.010G043500 [exp] 111 / 2e-28 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.008G188700 [exp] 111 / 2e-28 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024485 [exp] 434 / 4e-155 AT1G62990 406 / 4e-144 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001941 [exp] 365 / 3e-126 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001934 [exp] 361 / 2e-124 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10006291 [exp] 362 / 4e-124 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10003183 [exp] 298 / 3e-102 AT5G25220 381 / 2e-133 KNOTTED1-like homeobox gene 3 (.1.2) Lus10017824 [exp] 287 / 3e-98 AT1G62990 269 / 9e-92 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001195 [exp] 199 / 3e-64 AT1G62990 189 / 2e-60 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10013037 [exp] 114 / 3e-29 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10029125 [exp] 113 / 8e-29 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001238 [exp] 99 / 2e-23 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03790 [poplar] [flax] KNOX1 KNOX1 domain PF03791 [poplar] [flax] KNOX2 KNOX2 domain CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain
Representative CDS sequence Show only first row Show all	>Potri.001G112200.1 pacid=42788001 polypeptide=Potri.001G112200.1.p locus=Potri.001G112200 ID=Potri.001G112200.1.v4.1 annot-version=v4.1 ATGCAAGAACCAAACTTGGGCATGATGGGAAGTGGAAGTGGGGGTGCACTTGGTGGTTTAAGCAGTGGAGAGATGTCTGTGTCTTTATCAGGTGATCAGT CTCGCCAACTCAAGGCAGAAATAGCTACACACCCTTTATATGAGCAGCTATTATCAGCTCACGTGTCTTGCCTTCGTGTAGCTACACCAATTGATCAATT ACCTCTTATAGATGCTCAGTTATCACAATCTCATCATCTTCTTAGGTCTTATGCTTCACAGCACAACCAACATGGTCATTCTCTTTCTCCCCATGAAAGG CAAGACCTAGACAACTTCCTGGCACAGTATTTGATAATATTGTGTACTTTCAAAGACCAGCTTCAACAACATGTCAGAGTGCACGCCGTTGAAGCTGTTA TGGCCTGCCGTGAAATTGAGACCACCTTACAGGCTCTCACTGGTGTGACTCTAGGAGAAGGTACGGGTGCAACCATGTCTGACGATGAGGATGACCTGCA AATGGATTTCTCTTTAGATCAATCAAGTGCTGATGGGCATGACATGATGGGATTTGGCCCTCTGCTTCCTACAGAATCTGAAAGGTCTTTGATGGAGAGA GTTCGGCAGGAACTGAAGATTGAATTAAAGCAGGGCTTCAAATCAAGAATTGAAGATGTCAGGGAGGAGATATTGAGAAAAAGAAGGGCTGGAAAACTAC CGGGTGACACTACTTCAGTGCTGAAGAATTGGTGGCAGCAACACTCCAAGTGGCCTTACCCAACTGAAGATGACAAAGCAAAACTTGTGGAGGAGACAGG GTTACAGCTAAAGCAGATTAACAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCACAGCAACTCTCAATCGGTGACATCCTTGAAGTCCAAGCGCAAA AGGTAG
AA sequence Show only first row Show all	>Potri.001G112200.1 pacid=42788001 polypeptide=Potri.001G112200.1.p locus=Potri.001G112200 ID=Potri.001G112200.1.v4.1 annot-version=v4.1 MQEPNLGMMGSGSGGALGGLSSGEMSVSLSGDQSRQLKAEIATHPLYEQLLSAHVSCLRVATPIDQLPLIDAQLSQSHHLLRSYASQHNQHGHSLSPHER QDLDNFLAQYLIILCTFKDQLQQHVRVHAVEAVMACREIETTLQALTGVTLGEGTGATMSDDEDDLQMDFSLDQSSADGHDMMGFGPLLPTESERSLMER VRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK R

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Potri.001G112200 [exp]	0	1	KNAT7.1
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	2.00	0.9432
AT5G48940			Leucine-rich repeat transmembr...		Potri.005G188700 [exp]	3.46	0.9200
AT1G28280			VQ motif-containing protein (....		Potri.001G399100 [exp]	5.19	0.9027
AT4G36945			PLC-like phosphodiesterases su...		Potri.007G045200 [exp]	5.83	0.9228
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Potri.001G115600 [exp]	6.00	0.8911	Pt-ACR7.1
AT1G19835			Plant protein of unknown funct...		Potri.005G237100 [exp]	6.92	0.8986
AT4G33080			AGC (cAMP-dependent, cGMP-depe...		Potri.006G224800 [exp]	8.06	0.9110
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.004G174400 [exp]	9.16	0.8391	Pt-MYB4.1
AT1G02180			ferredoxin-related (.1)		Potri.006G220700 [exp]	9.38	0.9168
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.016G010200 [exp]	9.79	0.8838

Compare expression of checked genes

Potri.001G112200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.