Plant FIBer expression Database

Potri.001G112300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11860 603 / 0 Protein of unknown function (DUF544) (.1)
AT4G22960 120 / 1e-28 Protein of unknown function (DUF544) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G119800
[exp]
1049 / 0 AT4G11860 575 / 0.0 Protein of unknown function (DUF544) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006717
[exp]
651 / 0 AT4G11860 606 / 0.0 Protein of unknown function (DUF544) (.1)
Lus10014145
[exp]
477 / 7e-161 AT4G22960 167 / 4e-44 Protein of unknown function (DUF544) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04424 MINDY_DUB MINDY deubiquitinase
Representative CDS sequence
>Potri.001G112300.1 pacid=42788236 polypeptide=Potri.001G112300.1.p locus=Potri.001G112300 ID=Potri.001G112300.1.v4.1 annot-version=v4.1
ATGGCTTCTTCTCCTCCAAGCGAAGAATCACAAAACCAGAATCAAGATCGACAACAAGTAGCAGCAGTGAAAGAGCAAGAGAAGGAGTGCCTTCACAAAA
CCAAAACGATAGAGTTCTTAGGCCGTACCACTCCTATCGTTCTCCAAAATGACAATGGACCTTGTCCTCTGCTAGCCATCTGTAATGTTCTTCTGCTAAA
GAACAATCTAAATTTGAGCCCAGATAGCGCTGAAGTTTCACAGGAGAAATTGCTATCCCTTGTTGCAGAACGATTGATTGATTCCAACAGTAATGTAAAT
AACAAAGATGCAGGATATGTCGAAAATCAACAGCAGAATATTGCAGATGCTATTGATTTGCTTCCACGACTTGCAACTGGAATTGATGTAAATCTAAAGT
TTAGGAGGATAGATGATTTTGAGTTTACCCGAGAATGTGCCATATTTGATTTGCTTGACATTCCTTTATACCATGGTTGGATAGTTGATCCCCTGGACTA
TGATACTGCTAATGCCATCGGGTCAAAGTCCTATAATACTCTTATGGGGGAGCTTGTTGCTCTGGAAACAAGAAACATGGAAGATGAAAGTAAAAATGTT
ACCAGGGAAGATTTTAAAAGTAAGACCGAGGAAGACTGCGTTGACTTTGTTGCTGCTACAACTGCTACTTTGGGCGTTCCTTCTCCCTGTCTTTCAAAAG
CTAGGTCTTTTGATGATTCTCCACGTTCAGCCTCTGATCATCAAAATGTAAGAAAAGGGGATTTAGAAGAAGCAGCAGCACTATTGAGGGTCTTAAAATT
TTCGGAGGCTGAGTTGCCATGTTCAGCAGGCGATTCTCTTGTATCTGATGTTAATGGAAGGGTTTTGTTTGTTAGTTCAGATGAAAGTACATCTATGAAG
GGGGCTGTGACTGTGACTTCTTTGGATACATCAGAGGGACCTGTTGGTATTGATGGCAGTTTTAATGCATTGAGCAATGATGATAATAATAATCTGACAT
CCTTGGAAACTACTCTTCCAGGGGAAGTGACGTGCTCTTCCTTAAAGACTGATCTGAATGTTCATTTTGATCATTCAACTTGTACAGAATCTGGAGAACA
TATCTCTTGTGATGATACCATTAAGAATCGTAGTGTTGACACAGGTGTTGAGATTCAAGACGCAGTGTCCCTTTCTTGTGCAAAGAGTACTGCATCTTTG
AATGGAGACCGTGTGGATATTTTACATTACAGTCAGAAGGTTGAGAATCAGTGCACTTCTATTACCGAGGTTCATGAACCAGCAGATATTTCAAATGGGC
GTGACAAGGAGGATGTACCAGGGTCAGCTTCACCAGTTCTAGAGTCAAATTCATCTATTGGCAGAATGCAGAACGTAGACGCACCTGATACCTTTACTTC
AAGTGTTGATGGCAGTGAGCCAATATACGAGGGAGAAGAATGCATTTTGGATACAGGAACTTCAAATTATGAAGAGCGAGAGCCTATGTATGAAGGTGAA
GTGGTTCTTGCAGAACAAGCTGATAGAACTGTGAGGTCTAAGGATGAAATCACTCCACAGCAAGGGGAGCTGATAGGGAACTTTTTGAAGAACAATGCTA
GTCAGTTGACCTTTTATGGTCTCTTTTGCTTACAGGATGGGCTTAAAGAGCGAGAGTTGTGTGTTTTTTTCCGCAACAATCACTTTAGCACCATGTTTAA
GTATGATGGTGAGCTGTATCTTTTAGCTACAGACCAAGGTTACATTAATCAGCCTGATTTGGTGTGGGAGAAACTAAATGAGGTAAATGGAGATACATTG
TTTATGACAGGCAACTTCAAGGAATTCAGGGTGGAAAGTCATTCAAATGACCCATGGGATGAGCACAATGCCGTGACCAGTACTGCTGATTATCTTGCCA
GCATCGATAGTGCTGCACAAGCGGGTTTGGATATAAACTCTGATCTGCAACTGGCAATAGCTCTGCAGCAACAGGAGTTTGAGCAGCAGCAGCAGCAGCC
GCCGCCGCCGCCGCCACCGCAACGCCATAACATGCTGCAAGCATCCAGTACTGGTGGTTCGAGGCTAATCACAGGCCCCCAGGTGCCAAGGAGCAGTGGG
AAAACCACATCTTCTTCATCTTCCAGGTTTGATGCAAAGTCAAAAGACAAGTGTAGTCTGATGTGA
AA sequence
>Potri.001G112300.1 pacid=42788236 polypeptide=Potri.001G112300.1.p locus=Potri.001G112300 ID=Potri.001G112300.1.v4.1 annot-version=v4.1
MASSPPSEESQNQNQDRQQVAAVKEQEKECLHKTKTIEFLGRTTPIVLQNDNGPCPLLAICNVLLLKNNLNLSPDSAEVSQEKLLSLVAERLIDSNSNVN
NKDAGYVENQQQNIADAIDLLPRLATGIDVNLKFRRIDDFEFTRECAIFDLLDIPLYHGWIVDPLDYDTANAIGSKSYNTLMGELVALETRNMEDESKNV
TREDFKSKTEEDCVDFVAATTATLGVPSPCLSKARSFDDSPRSASDHQNVRKGDLEEAAALLRVLKFSEAELPCSAGDSLVSDVNGRVLFVSSDESTSMK
GAVTVTSLDTSEGPVGIDGSFNALSNDDNNNLTSLETTLPGEVTCSSLKTDLNVHFDHSTCTESGEHISCDDTIKNRSVDTGVEIQDAVSLSCAKSTASL
NGDRVDILHYSQKVENQCTSITEVHEPADISNGRDKEDVPGSASPVLESNSSIGRMQNVDAPDTFTSSVDGSEPIYEGEECILDTGTSNYEEREPMYEGE
VVLAEQADRTVRSKDEITPQQGELIGNFLKNNASQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVNGDTL
FMTGNFKEFRVESHSNDPWDEHNAVTSTADYLASIDSAAQAGLDINSDLQLAIALQQQEFEQQQQQPPPPPPPQRHNMLQASSTGGSRLITGPQVPRSSG
KTTSSSSSRFDAKSKDKCSLM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G11860 Protein of unknown function (D... Potri.001G112300
[exp]
0 1
AT1G32330 HSF ATHSFA1D heat shock transcription facto... Potri.003G095000
[exp]
1.41 0.8321 Pt-ATHSFA1.1
AT1G21380 Target of Myb protein 1 (.1) Potri.002G075500
[exp]
3.87 0.8420
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.003G115500
[exp]
4.12 0.7996
AT3G21650 Protein phosphatase 2A regulat... Potri.014G157000
[exp]
4.24 0.8139
AT4G28910 NINJA novel interactor of JAZ (.1.2.... Potri.018G085100
[exp]
6.70 0.8180
AT3G26000 Ribonuclease inhibitor (.1) Potri.001G337300
[exp]
7.48 0.8126
AT5G61910 DCD (Development and Cell Deat... Potri.001G136300
[exp]
8.94 0.7804
AT2G32700 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_ho... Potri.003G178600
[exp]
9.79 0.8306
AT2G41900 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type ... Potri.001G266700
[exp]
12.00 0.8264
AT5G06560 Protein of unknown function, D... Potri.016G065200
[exp]
12.32 0.7821

Potri.001G112300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.