Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22920 50 / 5e-08 ATNYE1, SGR1, STAY-GREEN1 non-yellowing 1 (.1) AT4G11910 48 / 2e-07 SGR2, STAY-GREEN2 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112600 [exp] 67 / 2e-14 AT4G22920 336 / 7e-117 non-yellowing 1 (.1) Potri.003G119600 [exp] 67 / 4e-14 AT4G22920 352 / 4e-123 non-yellowing 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001194 [exp] 56 / 5e-10 AT4G22920 350 / 7e-122 non-yellowing 1 (.1) Lus10024484 [exp] 56 / 7e-10 AT4G22920 340 / 4e-118 non-yellowing 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G112500.2 pacid=42789415 polypeptide=Potri.001G112500.2.p locus=Potri.001G112500 ID=Potri.001G112500.2.v4.1 annot-version=v4.1 ATGGCTAAATTGAATGGTGGTCCCCTGCATCCTTCAAAGCATGGTCCCTCTGTTTTTGAACAAAACAGCTCTTTCTTTTTCTATAGAAGAAAACCCATGA CGATCAAGAAGAAGAACCTATTCACTGGTCCTGTGGCAAGGCTACTAGGTCCGGCGATTTTTGAGGCTTCAAAGCCAAAGGTGTTGCTTCTAGAGGTTGA AAATAAGCAGCCAGCTGCAGGGGAGCTTCCTCCAAGGACTTGTACCCTAACGAACTGCTTAGCCCCCTCTATAATTTGCAAGACGAAAGCATTGCCTTCT ACAATTTTTTCTTGGGCTTGTCAGTACGCTATCATATTGCTAGCATTTATATTACTTCTTTCTTTCATTCCATTTCGCTGA
AA sequence Show only first row Show all	>Potri.001G112500.2 pacid=42789415 polypeptide=Potri.001G112500.2.p locus=Potri.001G112500 ID=Potri.001G112500.2.v4.1 annot-version=v4.1 MAKLNGGPLHPSKHGPSVFEQNSSFFFYRRKPMTIKKKNLFTGPVARLLGPAIFEASKPKVLLLEVENKQPAAGELPPRTCTLTNCLAPSIICKTKALPS TIFSWACQYAIILLAFILLLSFIPFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112500 [exp]	0	1
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.002G184500 [exp]	2.64	0.9713
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447700 [exp]	14.96	0.9522
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Potri.003G124500 [exp]	17.32	0.9543
AT5G35110			unknown protein		Potri.018G113901 [exp]	20.63	0.9540
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447900 [exp]	26.32	0.9345
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Potri.007G042200 [exp]	27.47	0.9513
AT5G61820			unknown protein		Potri.015G108700 [exp]	29.74	0.8867
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G151900 [exp]	29.79	0.9513
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152300 [exp]	32.18	0.9505
					Potri.019G075301 [exp]	34.87	0.9503

Compare expression of checked genes

Potri.001G112500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.