Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22920 336 / 6e-117 ATNYE1, SGR1, STAY-GREEN1 non-yellowing 1 (.1) AT4G11910 317 / 2e-109 SGR2, STAY-GREEN2 unknown protein AT4G11911 309 / 3e-106 unknown protein AT1G44000 177 / 8e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G119600 [exp] 459 / 2e-165 AT4G22920 352 / 4e-123 non-yellowing 1 (.1) Potri.002G075700 [exp] 191 / 2e-60 AT1G44000 259 / 2e-87 unknown protein Potri.005G184700 [exp] 190 / 6e-60 AT1G44000 279 / 8e-95 unknown protein Potri.001G112500 [exp] 67 / 4e-14 AT4G22920 50 / 6e-08 non-yellowing 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001194 [exp] 360 / 5e-126 AT4G22920 350 / 7e-122 non-yellowing 1 (.1) Lus10024484 [exp] 355 / 9e-124 AT4G22920 340 / 4e-118 non-yellowing 1 (.1) Lus10042769 [exp] 175 / 4e-54 AT1G44000 247 / 2e-82 unknown protein Lus10029738 [exp] 173 / 5e-53 AT1G44000 269 / 1e-90 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12638 [poplar] [flax] Staygreen Staygreen protein
Representative CDS sequence Show only first row Show all	>Potri.001G112600.1 pacid=42788768 polypeptide=Potri.001G112600.1.p locus=Potri.001G112600 ID=Potri.001G112600.1.v4.1 annot-version=v4.1 ATGGGTTCTTTGGCAGTTGCTCCCTTTCTTCCTTCAAAGCCAAGACCCTCTCTCTTTGATCAAAACAGCTCCCTCTTTTCTTCAAGTACAAAGCTCAAGA GGAAGAACCAATCTATCAGCCCTGTGGCAAGGTTATTTGGGCCATCTATTTTTGAGGCATCAAAGCTGAAGGTGCTGTTCTTAGGGGTTGATGAGAAGAA GCATCCAGGGAATCTGCCAAGGACTTATACTCTAACACACAGTGATATGACAGCTAAACTTACTTTAGCCATCTCACAGACCATAAACAATTCTCAGTTG CAGGGATGGTCCAACAAATTGTACCGAGATGAAGTGGTGGCAGAGTGGAAGAAAGTAAAGGGAAACATGTCTCTTCATGTTCATTGCCATATAAGTGGAG GCCATTTTCTTTTAGATTGGTGCTGTAGACTCAGATATTTCATCTTCCGCAGAGAACTCCCTGTGGTATTGAAGGCCTTTTTTCATGGAGATGGGAGTTT GTTGAGCAGCTATCCTGAATTACAGGAGGCTTTAGTTTGGGTTTACTTTCATTCAAACATTCCAGAATTCAGCAAGGTAGAGTGCTGGGGTCCACTCAAG GATGCTGCTGCGCCTTCTACTTCTGAAACTGGTGGGTCCAATGAGACCGAGGAGCTAGCAAACCAATCAAGCAACTGGGACTTGCCTGAGCCATGCCAAG AGGAGAATTGTAGCTGTTGCTTTCCACCAATGAGCTTGATCCCATGGTCTAAAATGGTTCCCTTGGAGAACAAAAAGAATCCAAGCACCCCACAGAGCTT TCAACAGCCCTAA
AA sequence Show only first row Show all	>Potri.001G112600.1 pacid=42788768 polypeptide=Potri.001G112600.1.p locus=Potri.001G112600 ID=Potri.001G112600.1.v4.1 annot-version=v4.1 MGSLAVAPFLPSKPRPSLFDQNSSLFSSSTKLKRKNQSISPVARLFGPSIFEASKLKVLFLGVDEKKHPGNLPRTYTLTHSDMTAKLTLAISQTINNSQL QGWSNKLYRDEVVAEWKKVKGNMSLHVHCHISGGHFLLDWCCRLRYFIFRRELPVVLKAFFHGDGSLLSSYPELQEALVWVYFHSNIPEFSKVECWGPLK DAAAPSTSETGGSNETEELANQSSNWDLPEPCQEENCSCCFPPMSLIPWSKMVPLENKKNPSTPQSFQQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112600 [exp]	0	1
AT2G45900			Phosphatidylinositol N-acetygl...		Potri.001G103400 [exp]	1.41	0.9744
AT4G32250			Protein kinase superfamily pro...		Potri.006G255700 [exp]	1.73	0.9702
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.007G065400 [exp]	1.73	0.9771	Pt-NAC1.1
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.009G098100 [exp]	3.31	0.9566
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.015G110000 [exp]	5.29	0.9682	Pt-ERD1.3
					Potri.004G187300 [exp]	9.53	0.9563
AT2G25625			unknown protein		Potri.006G248300 [exp]	11.48	0.9671
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Potri.004G172700 [exp]	14.96	0.9466
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Potri.018G013900 [exp]	16.09	0.9186
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G055900 [exp]	16.27	0.9433

Compare expression of checked genes

Potri.001G112600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.