Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22910 706 / 0 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT4G11920 695 / 0 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT5G13840 509 / 1e-178 FZR3 FIZZY-related 3 (.1.2) AT4G33270 324 / 2e-106 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 323 / 6e-106 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G27570 316 / 9e-104 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT5G27080 309 / 2e-100 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G26900 308 / 4e-100 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27945 267 / 2e-84 Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 69 / 5e-12 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G119500 [exp] 910 / 0 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.010G202100 [exp] 523 / 0 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 507 / 2e-177 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.016G118400 [exp] 335 / 3e-110 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 332 / 3e-109 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.013G048900 [exp] 330 / 2e-108 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 330 / 2e-108 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G110300 [exp] 286 / 2e-91 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G060500 [exp] 72 / 4e-13 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001192 [exp] 751 / 0 AT4G22910 734 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10024482 [exp] 745 / 0 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10040282 [exp] 510 / 9e-175 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10023401 [exp] 385 / 2e-130 AT5G13840 546 / 0.0 FIZZY-related 3 (.1.2) Lus10037593 [exp] 328 / 9e-108 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 321 / 5e-105 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 323 / 1e-101 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 298 / 4e-96 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 286 / 2e-92 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042748 [exp] 288 / 6e-88 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G112700.1 pacid=42788003 polypeptide=Potri.001G112700.1.p locus=Potri.001G112700 ID=Potri.001G112700.1.v4.1 annot-version=v4.1 ATGGCTGATCCCATGATTTCACAATCAACCCAATCAAAGCTCAACATTGCAGCCTCCACGACGCCACGTCATCATCATCATCTACATCTTGAAAACCCAA CTCCATCACCGTCATCATCAAAGCATGTCAATCGTCTCATTAATTCTAATCATTATATTTCCCCTTCGAGACCAATTTACTCCGATAGGTTTATTCCCTG CAGATCCAGCTCAAATTTCGCTCTTTTCAACATCTCTTTTCCGCAGCCGTCGGCGACGGCGGGGATATCGCCGGGATGTGGAGGGAAGGAGGATAATCCT AGTGCGTATGCGGCGTTGCTTCGGAATGCGCTTTTTGGTCCCCAGACTCCGGATAAGAAAGACTGGGGGGCAGGGGCGGCTGGACAGAATATTTTCCGGT ACAAGATGGAGACTAGGCAGTCGCTGCACTCGCTTTCCCCTTTCGGTTTTGATGATATGAGTGATCTTGGTGTTAGTAATGTTGCTATTAAGACTCCTAG GAAGGTTTCTAGATCACCTTATAAGGTATTGGACGCCCCTGCATTGCAAGATGATTTTTATTTGAATCTTGTGGATTGGTCGTCACATAATGTGTTGGCA GTGGGGTTAGGGAATTGTGTGTATTTATGGAATGCTTGTAGTAGCAAGGTGACAAAGTTGTGTGATTTGGGGAATGATGATGGTGTATGTTCAGTAGGAT GGGCTCATCGTGGTACGCATCTTGCTATTGGAACTAGCAATGGAAAAGTTCAGATTTGGGATGCTTCTCGCTGTAAAAGGATCAGAACCATGGAGGGCCA TCGATTGCGTGTTGGGGCCTTGGCCTGGAGTTCATCTATGCTGTCTTCTGGTAGCCGGGATAAGAGCATTCTTCAACGAGATATACGAGCACGGGAAGAC TTCGTTAGTAAACTCTCTGGACACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTGGCATCAGGTGGAAATGATAATCGACTCT TTGTTTGGAATCAACATTCAAGCCAACCTGTGCTAAAATACTGTGATCATACAGCGGCTGTAAAAGCAATTGCTTGGTCACCCCATCTTCATGGACTTCT TGCATCTGGGGGTGGGACTGCTGACCGGTGTATACGATTCTGGAATACAACCACTAACTCACATCTCAGCTGCATAGACACTGGCAGTCAGGTGTGCAAT CTTGTGTGGTCTAAGAATGTCAATGAACTTGTCAGCACACATGGATACTCCCAAAACCAAATAATATTGTGGAGATATCCCACCATGTCAAAGTTGGCAA CTCTGACAGGTCATACATTCAGAGTTCTTTATCTTGCCATCTCACCAGATGGACAGACAATTGTCACCGGAGCTGGAGATGAAACGCTGCGGTTTTGGAG TGTGTTTCCTTCCCCTAAATCTCAAAACACTGACAGTGAAATTGGAGCATCCTCTCTCGGTAGAACTACAATTCGGTGA
AA sequence Show only first row Show all	>Potri.001G112700.1 pacid=42788003 polypeptide=Potri.001G112700.1.p locus=Potri.001G112700 ID=Potri.001G112700.1.v4.1 annot-version=v4.1 MADPMISQSTQSKLNIAASTTPRHHHHLHLENPTPSPSSSKHVNRLINSNHYISPSRPIYSDRFIPCRSSSNFALFNISFPQPSATAGISPGCGGKEDNP SAYAALLRNALFGPQTPDKKDWGAGAAGQNIFRYKMETRQSLHSLSPFGFDDMSDLGVSNVAIKTPRKVSRSPYKVLDAPALQDDFYLNLVDWSSHNVLA VGLGNCVYLWNACSSKVTKLCDLGNDDGVCSVGWAHRGTHLAIGTSNGKVQIWDASRCKRIRTMEGHRLRVGALAWSSSMLSSGSRDKSILQRDIRARED FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSSQPVLKYCDHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCIDTGSQVCN LVWSKNVNELVSTHGYSQNQIILWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWSVFPSPKSQNTDSEIGASSLGRTTIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Potri.001G112700 [exp]	0	1
AT1G21780			BTB/POZ domain-containing prot...		Potri.005G178400 [exp]	6.08	0.6396
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.012G121596 [exp]	12.96	0.5787
AT2G15230		ATLIP1	lipase 1 (.1)		Potri.009G094900 [exp]	18.81	0.5850
AT1G48550			Vacuolar protein sorting-assoc...		Potri.015G037600 [exp]	28.49	0.5776
AT4G32090			Beta-1,3-N-Acetylglucosaminylt...		Potri.009G129400 [exp]	33.64	0.5829
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.009G041700 [exp]	45.60	0.5587
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.003G107000 [exp]	46.49	0.5302
AT4G10800			unknown protein		Potri.003G144700 [exp]	118.89	0.5044
AT2G10950			BSD domain-containing protein ...		Potri.018G125400 [exp]	215.07	0.4670
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.010G227700 [exp]	221.08	0.4489

Compare expression of checked genes

Potri.001G112700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.