Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12560 364 / 4e-128 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1) AT1G62980 348 / 5e-122 ATHEXPALPHA1.25, ATEXP18, ATEXPA18 EXPANSIN 18, expansin A18 (.1) AT3G55500 273 / 3e-92 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G39700 272 / 6e-92 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT4G01630 267 / 6e-90 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT2G37640 265 / 6e-89 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G56320 262 / 5e-88 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT1G69530 262 / 1e-87 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 260 / 2e-87 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G02260 260 / 3e-87 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G057100 [exp] 271 / 9e-92 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.010G202500 [exp] 270 / 6e-91 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.006G108000 [exp] 268 / 2e-90 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.006G086100 [exp] 266 / 1e-89 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.002G184700 [exp] 266 / 2e-89 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1) Potri.009G031800 [exp] 265 / 7e-89 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.001G240900 [exp] 265 / 7e-89 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.016G135200 [exp] 264 / 7e-89 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.001G001100 [exp] 264 / 9e-89 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014137 [exp] 406 / 1e-144 AT1G12560 366 / 9e-129 expansin A7 (.1) Lus10024478 [exp] 406 / 2e-144 AT1G12560 360 / 2e-126 expansin A7 (.1) Lus10006711 [exp] 400 / 4e-142 AT1G12560 363 / 9e-128 expansin A7 (.1) Lus10002997 [exp] 323 / 1e-112 AT1G62980 289 / 2e-99 EXPANSIN 18, expansin A18 (.1) Lus10040286 [exp] 269 / 1e-90 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10016533 [exp] 269 / 1e-90 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040801 [exp] 269 / 1e-90 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10036763 [exp] 266 / 9e-90 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10038013 [exp] 265 / 3e-89 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10009253 [exp] 265 / 3e-89 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.001G112900.1 pacid=42790603 polypeptide=Potri.001G112901.1.p locus=Potri.001G112900 ID=Potri.001G112900.1.v4.1 annot-version=v4.1 ATGGCTTCCTTTTTTCATTCATGGAGCTTTAGCCTCTTCTTGATAGTGTTGACTTCAGCAATGTTCATCGGCAAATCAATGGCCGTAGGTTATGGTAAAG CACGCGTACCAACGGTGTTCCGGCCGAGCCAATGGTCGCTTGCCCACGCCACCTTTTATGGCGATGAGACCGCTCGCGAGACCATGGGAGGGGCTTGCGG GTATGGAAATTTGTTCCAAACTGGATACGGAACCAATACTGCTGCATTGAGCACAACATTATTCAACAACGGATATGCCTGTGGGACTTGTTACCAAATA AAATGTACGAATGCTCCTGCATGCTATGGGGTAATTACAACGGTGACTGCTACAAACATCTGCCCTCCGAATTGGTCCCAGGATTCTAACAATGGTGGAT GGTGCAACCCTCCTCGAGTTCACTTTGACATGTCCAAGCCTGCATTCATGAAAATTGCTCAATGGAAGGCTGGCATCGTCCCAGTCATGTACCGAAGAGT ACCATGTGCAAGAACTGGCGGGCTTCGATTCAAGCTCCAAGGAAATGGGTACTGGTTGCTGGTGTATGTGATGAATGTAGGAGGAGGTGGTGACATTGCC AGCATGTGGGTGAAGGGAAGCAAAACAGGATGGATAAGCATGAGCCATAACTGGGGAGCTTCATACCAGGCATTTGCTAGCCTTCGAGGACAAGCTCTAT CTTTCAAGATCACTTCTTACACAACCAAGCAGACTGTTATTGCATTGAATGTTGCTCCTTCAACCTGGGGTGCAGGGATGACATATAAATCAACTGTGAA CTTCAGTTAG
AA sequence Show only first row Show all	>Potri.001G112900.1 pacid=42790603 polypeptide=Potri.001G112901.1.p locus=Potri.001G112900 ID=Potri.001G112900.1.v4.1 annot-version=v4.1 MASFFHSWSFSLFLIVLTSAMFIGKSMAVGYGKARVPTVFRPSQWSLAHATFYGDETARETMGGACGYGNLFQTGYGTNTAALSTTLFNNGYACGTCYQI KCTNAPACYGVITTVTATNICPPNWSQDSNNGGWCNPPRVHFDMSKPAFMKIAQWKAGIVPVMYRRVPCARTGGLRFKLQGNGYWLLVYVMNVGGGGDIA SMWVKGSKTGWISMSHNWGASYQAFASLRGQALSFKITSYTTKQTVIALNVAPSTWGAGMTYKSTVNFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Potri.001G112900 [exp]	0	1
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.006G070400 [exp]	6.48	0.5854
					Potri.013G159901 [exp]	59.03	0.4995
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Potri.006G194200 [exp]	60.00	0.4995
AT2G14760	bHLH	bHLH084	basic helix-loop-helix (bHLH) ...		Potri.014G017100 [exp]	89.19	0.5022
AT3G47670			Plant invertase/pectin methyle...		Potri.003G123500 [exp]	131.14	0.4669
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.002G046900 [exp]	141.35	0.4771
AT3G51020			unknown protein		Potri.002G011500 [exp]	150.74	0.4759
AT1G74500	bHLH	TMO7, PRE3, ATB...	TARGET OF MONOPTEROS 7, activa...		Potri.012G069500 [exp]	281.26	0.4047

Compare expression of checked genes

Potri.001G112900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.