Plant FIBer expression Database

Potri.001G113000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22890 392 / 3e-137 PGR5-LIKEA, PGR5-LIKE A PGR5-LIKE A (.1.2.3.4.5)
AT4G11960 370 / 9e-129 PGRL1B, PGR5-LIKE B PGR5-like B (.1.2)
AT5G59400 47 / 1e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G119200
[exp]
483 / 3e-173 AT4G22890 410 / 1e-144 PGR5-LIKE A (.1.2.3.4.5)
Potri.009G032300
[exp]
64 / 2e-11 AT5G59400 343 / 8e-119 unknown protein
Potri.001G241400
[exp]
59 / 7e-10 AT5G59400 357 / 2e-124 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014135
[exp]
416 / 1e-146 AT4G22890 465 / 3e-166 PGR5-LIKE A (.1.2.3.4.5)
Lus10006710
[exp]
412 / 3e-145 AT4G22890 468 / 2e-167 PGR5-LIKE A (.1.2.3.4.5)
Lus10040799
[exp]
56 / 1e-08 AT5G59400 316 / 3e-108 unknown protein
Lus10016531
[exp]
54 / 6e-08 AT5G59400 311 / 2e-106 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G113000.3 pacid=42791368 polypeptide=Potri.001G113000.3.p locus=Potri.001G113000 ID=Potri.001G113000.3.v4.1 annot-version=v4.1
ATGGCTGGCAAGTTAGCATTTACGTTGACATCTCCTCGAGTCCTCATTGCTCCGATTCAAAAACCATTCATCTCCTCATCTTCTTCATTACCACCTCCTT
CTTGCTCTAGCAGTACCAGGGTTCATTTCAATGTCAAACAGTTTTCTCTGCGGCGAAGAATGCTTTTACCACCTACCAAGGCCACTGCTGACCAACAAGC
TGATCAAGCCCAAGAAGATGAGATGGTTGATGGTAAAATCTTGCAATACTGTAGCATAGACAAGAGAGGAAAAAAGTCAATAGGTGAAATGGAGCAAGAG
TTTCTACAAGCACTACAAGCATTCTATTATGAGGGAAAAGCTATAATGTCTAATGAGGAATTTGATAATCTCAAGGAAGAACTAATGTGGGAAGGAAGCA
GCGTGGTTATGCTGAGTTCTGATGAACAGAAGTTTCTTGAGGCCTCAATGGCTTATGTATCAGAGAATCCAATCATGAGTGATAAAGAGTATGATGAGCT
GAAAATGAAATTAAAGTCTGAAGGCAGCGAAATAGTTGTCGAGGGTCCAAGATGCAGTCTTCGTAGTAGAAAGGTTTACAGTGACCTGTATGTTGACTAT
CTGAAGATGTTCCTGCTGAACGTACCAGCAACCGTTACTGCACTAGGCTTGTTTTTCTTCTTGGATGATCTCACTGGTTTTGAAATCACTTATCTTTTGG
AGCTCCCAGAGCCATTCAGTTTCCTTTTCACCTGGTTTGCTGCTGTGCCCCTCATTGTTTGGTTAGCTCTGACACTAACAAATGCAATAGTGAAGGACTT
TTTGATCTTGAAGGGCCCCTGCCCCAACTGTGGCACGGAGAACGGCTCCTTCTTTGGAACCATATTGTCTATTTCAAGTGGTGGAACCACCAACACCCTT
AAATGCTCAAATTGCTCAACCGAGTTAGTTTACAATTCAAAAACACGGTTGATTACACTGCCGGAAGGAAGCGAAGCTTGA
AA sequence
>Potri.001G113000.3 pacid=42791368 polypeptide=Potri.001G113000.3.p locus=Potri.001G113000 ID=Potri.001G113000.3.v4.1 annot-version=v4.1
MAGKLAFTLTSPRVLIAPIQKPFISSSSSLPPPSCSSSTRVHFNVKQFSLRRRMLLPPTKATADQQADQAQEDEMVDGKILQYCSIDKRGKKSIGEMEQE
FLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSENPIMSDKEYDELKMKLKSEGSEIVVEGPRCSLRSRKVYSDLYVDY
LKMFLLNVPATVTALGLFFFLDDLTGFEITYLLELPEPFSFLFTWFAAVPLIVWLALTLTNAIVKDFLILKGPCPNCGTENGSFFGTILSISSGGTTNTL
KCSNCSTELVYNSKTRLITLPEGSEA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G22890 PGR5-LIKEA, PGR... PGR5-LIKE A (.1.2.3.4.5) Potri.001G113000
[exp]
0 1
AT1G04920 ATSPS3F sucrose phosphate synthase 3F ... Potri.001G317600
[exp]
1.73 0.9735
AT5G04140 GLS1, GLUS, GLU... FERREDOXIN-DEPENDENT GLUTAMATE... Potri.016G036900
[exp]
2.00 0.9694 Pt-GLU1.1
AT5G35170 adenylate kinase family protei... Potri.018G113400
[exp]
3.87 0.9710
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Potri.009G141300
[exp]
4.24 0.9713
AT5G64940 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-R... Potri.005G083200
[exp]
4.47 0.9686
AT5G58140 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LI... Potri.009G170640
[exp]
5.19 0.9599
AT1G75730 unknown protein Potri.005G238800
[exp]
6.32 0.9600
AT1G52510 alpha/beta-Hydrolases superfam... Potri.001G201500
[exp]
7.00 0.9600
AT1G17220 FUG1 fu-gaeri1, Translation initiat... Potri.011G140100
[exp]
10.95 0.9630
AT1G64110 DAA1 DUO1-activated ATPase 1, P-loo... Potri.003G133700
[exp]
12.64 0.9420

Potri.001G113000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.