Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12550 341 / 7e-117 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 340 / 3e-116 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G79870 250 / 2e-81 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G72190 99 / 3e-23 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 97 / 2e-22 FDH formate dehydrogenase (.1) AT1G17745 98 / 3e-22 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 91 / 6e-20 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 89 / 2e-19 D-3-phosphoglycerate dehydrogenase (.1) AT1G68010 87 / 6e-19 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT5G28310 0 / 1 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G119000 [exp] 511 / 0 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151100 [exp] 359 / 1e-123 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 349 / 7e-120 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 348 / 1e-119 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 344 / 2e-117 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 264 / 1e-86 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 257 / 4e-84 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.010G249600 [exp] 97 / 4e-22 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.014G161300 [exp] 95 / 1e-21 AT5G14780 581 / 0.0 formate dehydrogenase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036537 [exp] 348 / 1e-119 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 345 / 2e-118 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10041393 [exp] 338 / 1e-115 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10014133 [exp] 334 / 5e-114 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10025796 [exp] 272 / 5e-90 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 270 / 4e-89 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 263 / 2e-86 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 246 / 8e-80 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 243 / 1e-78 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036538 [exp] 137 / 4e-40 AT2G45630 132 / 2e-38 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0325 [poplar] [flax] Form_Glyc_dh PF00389 [poplar] [flax] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.001G113250.1 pacid=42788459 polypeptide=Potri.001G113250.1.p locus=Potri.001G113250 ID=Potri.001G113250.1.v4.1 annot-version=v4.1 ATGGAGAGAAATAACGCCAATCCCCAAGATTTGCCCATGGCTGTAGAGGCAAATCAAGAAGGGTTGCAGTCAAATGAGGATCTCCATCTAGTCCTCGTGC TTCGTCTCCCATCATTCAACTTGCCAGTGAATGACATCCTACGGCCTCACTTCCACCTCCTTGATCCAGCTGATTCACCTGAACCTGCTAGCTCCTTCCT GTCCAATCATGCACAATCTGTTAGAGCTCTCATCTGTGTGGGCTATGCTCCCGTCACCGCAGAAACTCTCAATCTCCTTCCTTCATTGGAGCTCATAGTG GCGTCTAGTGCTGGCGTTGACCACATTGATATACAGGAATGTCGCCGTCGTGGAATTATTATGACGAATGCTAGTACAGCATTCGCGGAAGATGCTGCAG ACTATGCGGTGGCATTGTTGATTGATGTTTGGCGTAGAATATCAGCTGCAGACCGATTCCTTCATGCCGGCTTGTGGCCTGTTAAGGGAGATTATCCACT AGCTTCCAAGTTAAGAGGAAAACGAGTTGGGATAGTTGGACTTGGAAGTATTGGATTTGAAGTATCAAAAAGACTGGAGGCGTTTGGTTGTAGCATTGCT TACAATTCACGAATGGAGAAGCCATCTGTTCCATTTCCTTACTATGCTAATGTCCTTGACCTTGCAGCACACAGTGATGCTCTCGTTCTTTGTTGTTCAC TGACAGAACAAACTCGCCATATAATTAACAAGGATGTGATGACAGCATTGGGAAAGAAAGGGGTGATCATTAACGTTGGACGTGGTGGTCTTATTGATGA AAAAGAATTAGTGCAGTTTTTGTTGAGAGGAGACATTGGTGGTGCAGGTCTTGATGTGTTTGAGAATGAGCCTGATGTGCCTAGAGAGCTATTTGAACTG GACAACGTAGTGTTGTCCCCACACAGAGCTGTTGCTACCCCAGAATCATTTGAAGCAGTATTTCAGCTAATTTTCACAAACTTGAAGGCATTCTTTTCTA ATAAACCTTTGCAATCAGTCTATCAGATTGAATGA
AA sequence Show only first row Show all	>Potri.001G113250.1 pacid=42788459 polypeptide=Potri.001G113250.1.p locus=Potri.001G113250 ID=Potri.001G113250.1.v4.1 annot-version=v4.1 MERNNANPQDLPMAVEANQEGLQSNEDLHLVLVLRLPSFNLPVNDILRPHFHLLDPADSPEPASSFLSNHAQSVRALICVGYAPVTAETLNLLPSLELIV ASSAGVDHIDIQECRRRGIIMTNASTAFAEDAADYAVALLIDVWRRISAADRFLHAGLWPVKGDYPLASKLRGKRVGIVGLGSIGFEVSKRLEAFGCSIA YNSRMEKPSVPFPYYANVLDLAAHSDALVLCCSLTEQTRHIINKDVMTALGKKGVIINVGRGGLIDEKELVQFLLRGDIGGAGLDVFENEPDVPRELFEL DNVVLSPHRAVATPESFEAVFQLIFTNLKAFFSNKPLQSVYQIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Potri.001G113250 [exp]	0	1
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.018G079300 [exp]	1.00	0.9312
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	3.46	0.9155	CHC901
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.009G045100 [exp]	4.58	0.9174
AT1G71180			6-phosphogluconate dehydrogena...		Potri.001G211500 [exp]	6.48	0.9070
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.002G028700 [exp]	8.60	0.9178	VFCYSPRO.1
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.018G070400 [exp]	8.66	0.9100
AT4G35220			Cyclase family protein (.1)		Potri.001G301501 [exp]	10.77	0.8876
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Potri.014G079400 [exp]	11.48	0.8983	Pt-DGD2.1
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.007G018900 [exp]	15.09	0.8942
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.009G159800 [exp]	15.23	0.9049

Compare expression of checked genes

Potri.001G113250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.