Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25410 125 / 5e-35 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51790 124 / 7e-35 bHLH bHLH120 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G62975 119 / 1e-32 bHLH bHLH125 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 111 / 1e-30 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12540 110 / 4e-29 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25400 103 / 2e-27 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 50 / 4e-07 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134300 [exp] 162 / 3e-49 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132000 [exp] 155 / 6e-47 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132100 [exp] 114 / 5e-31 AT4G25410 120 / 3e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134400 [exp] 103 / 8e-27 AT5G51790 107 / 2e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G053400 [exp] 59 / 4e-10 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G074500 [exp] 53 / 2e-08 AT4G20970 117 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G044400 [exp] 52 / 4e-08 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G079100 [exp] 47 / 2e-06 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099500 [exp] 47 / 4e-06 AT4G20970 83 / 2e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007049 [exp] 145 / 2e-42 AT1G62975 138 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 134 / 4e-38 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 124 / 2e-34 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 111 / 1e-29 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 110 / 2e-29 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006707 [exp] 94 / 6e-24 AT1G62975 89 / 8e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027396 [exp] 86 / 7e-20 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031675 [exp] 84 / 4e-19 AT4G25400 94 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042128 [exp] 57 / 8e-10 AT4G20970 96 / 6e-25 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G113400.2 pacid=42789105 polypeptide=Potri.001G113400.2.p locus=Potri.001G113400 ID=Potri.001G113400.2.v4.1 annot-version=v4.1 ATGGATTATATTTCATCAGTTTTTCAGATAGACTACAATAGCACTGATGATCTTGTCCAATATTTCTCTTCTTTTCCAACCCAACAACAGACAACCCCTA AAGATAAAGTTCCATTAAGACCTTATGAAGATTGCCATGATCTTGCCAACAAAACTCAACATGGCCGGCGCCGTAAATCACCCATCGCTCTTGGATCTGT CAAAGATGAAAACCCTAATGACAACAAGAAGAAGAAAATCATCCATAGAGACATTGAGAGACAAAGAAGGCAAGAAATGGCTAACCTTTATGGGTCCCTA CGATGCCTTCTCCCCCTTAAATATCTCAAGGGAAAGAGATCTACATCAGATCACATTCACCAGACAGTATACTATATAAAACATCAAGAGGAAAAGATCC AAAAGCTGATTGACAAGAAAGATGAACTAAAAAGGTACTTGTCTACTTCTTCTGCACTTGAAAACTTGGAAGGTTGTGAGAGGGATACCTTGACAGTCAG AACTCGTTGTGTTGGAGTTGAGGTTGACATTAACACTGCCTTGAAAAAAGGGTTTCCTCTTTCAAGAGTGCTTGCAATTCTAATTGAAGAAGGGTTCAGT GTTGTTAGCTGCATTTCAACTAAAGTAAACGAGAGGATGCTCCACAATATTATATCTGAGGTCACTGATGGAAGAAGTCTGGATATTTCTGAGCTGCAAC AGAAGCTAACAAGCGCAATAGTCTAG
AA sequence Show only first row Show all	>Potri.001G113400.2 pacid=42789105 polypeptide=Potri.001G113400.2.p locus=Potri.001G113400 ID=Potri.001G113400.2.v4.1 annot-version=v4.1 MDYISSVFQIDYNSTDDLVQYFSSFPTQQQTTPKDKVPLRPYEDCHDLANKTQHGRRRKSPIALGSVKDENPNDNKKKKIIHRDIERQRRQEMANLYGSL RCLLPLKYLKGKRSTSDHIHQTVYYIKHQEEKIQKLIDKKDELKRYLSTSSALENLEGCERDTLTVRTRCVGVEVDINTALKKGFPLSRVLAILIEEGFS VVSCISTKVNERMLHNIISEVTDGRSLDISELQQKLTSAIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.001G113400 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335200 [exp]	7.61	0.8369
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.016G138700 [exp]	15.87	0.7553
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.001G235300 [exp]	17.88	0.7673
AT3G58710	WRKY	ATWRKY69, WRKY6...	RABIDOPSIS THALIANA WRKY DNA-B...		Potri.014G119800 [exp]	21.35	0.7679
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.001G266400 [exp]	44.74	0.7846	CESA4.6
AT1G23100			GroES-like family protein (.1)		Potri.010G111600 [exp]	49.20	0.7863
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	71.84	0.7719	FLA14.5
AT3G14200			Chaperone DnaJ-domain superfam...		Potri.001G164700 [exp]	72.22	0.7700
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.003G120800 [exp]	77.66	0.7451
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.019G077200 [exp]	86.30	0.7675	AGL11.1

Compare expression of checked genes

Potri.001G113400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.