Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11970 399 / 3e-138 YTH family protein (.1.2.3) AT1G30460 135 / 1e-34 C3HZnF CPSF30, ATCPSF30 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) AT3G17330 79 / 1e-15 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT5G58190 77 / 5e-15 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT1G48110 76 / 9e-15 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT1G55500 69 / 2e-12 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G13060 69 / 2e-12 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G27960 69 / 2e-12 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT1G79270 68 / 5e-12 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G13460 68 / 5e-12 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089901 [exp] 145 / 3e-38 AT1G30460 613 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.001G357800 [exp] 139 / 9e-36 AT1G30460 602 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.018G149800 [exp] 79 / 2e-15 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2) Potri.004G223800 [exp] 77 / 5e-15 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.014G001000 [exp] 76 / 8e-15 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 76 / 1e-14 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.003G008400 [exp] 75 / 3e-14 AT1G09810 346 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Potri.006G079900 [exp] 72 / 2e-13 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.010G152300 [exp] 72 / 3e-13 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007048 [exp] 414 / 2e-144 AT4G11970 335 / 1e-113 YTH family protein (.1.2.3) Lus10006706 [exp] 384 / 4e-133 AT4G11970 335 / 1e-114 YTH family protein (.1.2.3) Lus10023254 [exp] 139 / 1e-35 AT1G30460 688 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10027582 [exp] 80 / 5e-16 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10008853 [exp] 77 / 7e-15 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10037028 [exp] 76 / 1e-14 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037365 [exp] 76 / 1e-14 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10015778 [exp] 75 / 1e-14 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10035790 [exp] 76 / 2e-14 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10034792 [exp] 74 / 7e-14 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF04146 [poplar] [flax] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G113500.2 pacid=42792584 polypeptide=Potri.001G113500.2.p locus=Potri.001G113500 ID=Potri.001G113500.2.v4.1 annot-version=v4.1 ATGTCTTCTGATAGTGCAAAGGAAAATGCATCTGTAGTTGATTCTTCGGTGACTGAATGGAAGCATGACATGGGAAACTCTGACGATCCAGAAAGCCCAA GCTACAAAGGTAATGAGGATGGCTATCCTATTATGGCTGAAAAAGCAGGTCATGATCGGGTGGGAAATTCATCTATAAACAAAAAGAGAAAATTGTGTAA TACAAGATATTTCATCATTAAGAGTTTGAATCAGCATAATATCCAACTATCAATTGAGAATGGGATATGGGCTACTCAAGTCAGGAATGAACCAATTTTG GAAGAAGCCTTTCATAATTCTGGTAGAGTCATTCTAATATATAGTGTCAACATGAGTGGTTTCTTCCAAGGGTATGCCCAAATGATATCTTCTGTTGGGT GGAGGCACGACAATTTATGGAGCGAAGGAAGTGGTAAAAGTAATCCTTGGGGTCGCAGTTTTAAGGTTAAGTGGCTGCGATTAAATGACTTGCCTTTCCA AAAGACGCTTCATCTCAAGAATCCACTGAATGACTACAAACCTGTTAAAATTAGCAGAGACTGCCAGGAACTACCTGAAGATATAGGAGAAGCCCTTTGT GAGCTAATTGATGGGGAGAGAGACACTGATGGCATGGTGAAAAGGGATGATCTTCCTATGAAAAGGCCTTGCATTGATCCTTCATCTTACACAGGAGATG GAGTGTATACTGTCCCTCCACTGCAGATGCCTTGGGGCAGGACACCCACACCTTATCCTTCCTTCCTCTACCAGCAACATGATGAAGCAAGTAGATTTCA TTTAGCACATCAGGGACCTACTGGTGCTGGTTTCACTGACAATGCTCTTAGCTCCGGTGCTTCAAAAGTTGCAAGGATGAAACAGTCTCGAAACTCCACT AATTTGCGAATACACTGTGAAATGCCTTCACGAACTGATATTTGGGGTTTGTCAGCAGAAAGCCCTCTTGCTAGTACTCTGACTGATGATGATTTTCTTG AAATGACATATGAAGAGTACCTGGAAGTCCATAGCAGGAGCATCAAGCAATTAAATCCCCCTGCAGCTGGACCATCTCAGACAACACATGAGCCTTCAAG AAGTAAGAAACATGATGACAATTTAAACTCAAGTTTTGTAACTGACCTCGGCCACCCCCGTAAAAGGTCACACTCACGTAATTCATCTGAGAAATGA
AA sequence Show only first row Show all	>Potri.001G113500.2 pacid=42792584 polypeptide=Potri.001G113500.2.p locus=Potri.001G113500 ID=Potri.001G113500.2.v4.1 annot-version=v4.1 MSSDSAKENASVVDSSVTEWKHDMGNSDDPESPSYKGNEDGYPIMAEKAGHDRVGNSSINKKRKLCNTRYFIIKSLNQHNIQLSIENGIWATQVRNEPIL EEAFHNSGRVILIYSVNMSGFFQGYAQMISSVGWRHDNLWSEGSGKSNPWGRSFKVKWLRLNDLPFQKTLHLKNPLNDYKPVKISRDCQELPEDIGEALC ELIDGERDTDGMVKRDDLPMKRPCIDPSSYTGDGVYTVPPLQMPWGRTPTPYPSFLYQQHDEASRFHLAHQGPTGAGFTDNALSSGASKVARMKQSRNST NLRIHCEMPSRTDIWGLSAESPLASTLTDDDFLEMTYEEYLEVHSRSIKQLNPPAAGPSQTTHEPSRSKKHDDNLNSSFVTDLGHPRKRSHSRNSSEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11970			YTH family protein (.1.2.3)		Potri.001G113500 [exp]	0	1
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.013G099700 [exp]	2.23	0.8397	SGR2.1
AT4G03090			sequence-specific DNA binding;...		Potri.002G213400 [exp]	13.26	0.7994
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.007G060600 [exp]	17.05	0.8150
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	21.16	0.8183
AT4G27190			NB-ARC domain-containing disea...		Potri.001G423925 [exp]	27.38	0.8022
AT1G18610			Galactose oxidase/kelch repeat...		Potri.012G062100 [exp]	27.56	0.7163
AT1G49180			protein kinase family protein ...		Potri.019G011600 [exp]	29.39	0.8116
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.009G073800 [exp]	36.02	0.7259
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	44.58	0.7635
AT5G65050	MADS	MAF2, AGL31	MADS AFFECTING FLOWERING 2, AG...		Potri.003G170200 [exp]	49.64	0.7359

Compare expression of checked genes

Potri.001G113500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.