Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12520 377 / 1e-131 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3) AT2G28190 61 / 9e-11 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1) AT1G08830 54 / 7e-09 CSD1 copper/zinc superoxide dismutase 1 (.1.2) AT5G18100 53 / 1e-08 CSD3 copper/zinc superoxide dismutase 3 (.1.2) AT1G06330 49 / 4e-07 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 46 / 7e-06 Heavy metal transport/detoxification superfamily protein (.1) AT4G10465 45 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 44 / 2e-05 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT3G02960 45 / 3e-05 Heavy metal transport/detoxification superfamily protein (.1) AT4G39700 44 / 3e-05 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118400 [exp] 476 / 2e-170 AT1G12520 393 / 8e-138 copper chaperone for SOD1 (.1.2.3) Potri.004G216700 [exp] 64 / 1e-11 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1) Potri.009G005100 [exp] 61 / 1e-10 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1) Potri.005G044400 [exp] 57 / 1e-09 AT1G08830 266 / 5e-93 copper/zinc superoxide dismutase 1 (.1.2) Potri.011G065600 [exp] 52 / 2e-08 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.013G056900 [exp] 52 / 4e-08 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2) Potri.013G031100 [exp] 50 / 2e-07 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2) Potri.010G005300 [exp] 51 / 3e-07 AT4G39700 55 / 3e-09 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G106500 [exp] 49 / 5e-07 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007031 [exp] 422 / 5e-149 AT1G12520 399 / 5e-140 copper chaperone for SOD1 (.1.2.3) Lus10006686 [exp] 418 / 2e-147 AT1G12520 393 / 6e-138 copper chaperone for SOD1 (.1.2.3) Lus10016155 [exp] 59 / 5e-10 AT2G28190 308 / 1e-107 copper/zinc superoxide dismutase 2 (.1) Lus10010651 [exp] 59 / 2e-09 AT5G18100 228 / 9e-75 copper/zinc superoxide dismutase 3 (.1.2) Lus10001719 [exp] 57 / 3e-09 AT1G08830 250 / 6e-85 copper/zinc superoxide dismutase 1 (.1.2) Lus10021410 [exp] 56 / 4e-09 AT2G28190 306 / 5e-107 copper/zinc superoxide dismutase 2 (.1) Lus10004139 [exp] 54 / 1e-08 AT1G08830 253 / 4e-88 copper/zinc superoxide dismutase 1 (.1.2) Lus10016436 [exp] 47 / 2e-06 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 47 / 2e-06 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10013615 [exp] 47 / 1e-05 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00080 [poplar] [flax] Sod_Cu Copper/zinc superoxide dismutase (SODC) PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.001G113800.1 pacid=42788343 polypeptide=Potri.001G113800.1.p locus=Potri.001G113800 ID=Potri.001G113800.1.v4.1 annot-version=v4.1 ATGGCTTTTCTCAGGTCAGTAACAAACACAACAAAGGTTGCCATACCTGCCTCTGCTTTACCTGATGCCTCTGCTCTCTCATCTATATCTACTTCTTCTC CATATCCCAAACCCCGAAACCTTTCTTTTCTCTCCCCATCATCTTCTCTTCTCTCCTCAACTGCCTCTGGCCTTGTAAAGAATTTGACTCAGCCTCCTTC TGCCCTTAACATGGAAACACCTGCATCGAATCACATGTCCATCTCACAGGATAATGTAACCCTGCCTGAGTTATTTACAGAATTTATGGTGGATATGAAG TGTGATGGCTGTGTTAATTCAGTAAAGAATAAGTTACAAAGTGTTAATGGAGTGAAGAATGTGGAGGTTGATTTGGCGAATCAAGTGGTGAGAATCCTCG GGTCGTCTCCAGTGAATACTATGACTGAAGCTTTAGAGCAGACAGGTCGAAATGCTAGATTAATTGGCCAAGGGATCCCTGAAGACTTTTTAGTGTCTGC TGCTGTTGCTGAATTCAAAGGTCCAGAAATTTTTGGTGTTGTTCGCTTTGCTCAGGTGAATATGGATCTAGCTAGGATCGAAGCCAACTTTACTGGATTG TCACTTGGTAAACACGGCTGGTCTATCAATGAGTTTGGTGATCTAACAGAAGGAGCAGCAAGCACTGGGAAAGTGTTTAATCCAACAAATCAAGGAACTG AACTAGAGCCTCTTGGCGACCTGGGAACATTATATGTCGATGAGAAAGGAGATGCCTTCTTCTCGGGCACCATACAGAAGCTAAGAATTGCAGATCTGAT TGGGAGATCACTAGTAGTATATGGAACTGAAGATAAATCAGATAAAGGTCTAACAGCAGCAGTAATTGCTAGAAGTGCAGGAGTTGGTGAGAATTACAAA AAGATTTGTACATGTGATGGGACGACCATATGGGAATCCAGTAATAACGATTTTGTTGCCGGTAAGGTTTGA
AA sequence Show only first row Show all	>Potri.001G113800.1 pacid=42788343 polypeptide=Potri.001G113800.1.p locus=Potri.001G113800 ID=Potri.001G113800.1.v4.1 annot-version=v4.1 MAFLRSVTNTTKVAIPASALPDASALSSISTSSPYPKPRNLSFLSPSSSLLSSTASGLVKNLTQPPSALNMETPASNHMSISQDNVTLPELFTEFMVDMK CDGCVNSVKNKLQSVNGVKNVEVDLANQVVRILGSSPVNTMTEALEQTGRNARLIGQGIPEDFLVSAAVAEFKGPEIFGVVRFAQVNMDLARIEANFTGL SLGKHGWSINEFGDLTEGAASTGKVFNPTNQGTELEPLGDLGTLYVDEKGDAFFSGTIQKLRIADLIGRSLVVYGTEDKSDKGLTAAVIARSAGVGENYK KICTCDGTTIWESSNNDFVAGKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Potri.001G113800 [exp]	0	1
					Potri.010G212850 [exp]	4.24	0.9231
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Potri.009G046400 [exp]	6.32	0.8224
AT3G16640		TCTP	translationally controlled tum...		Potri.010G013400 [exp]	8.71	0.8733	Pt-TCTP.2
					Potri.004G063101 [exp]	9.16	0.9131
AT5G56320		ATHEXPALPHA1.5,...	EXPANSIN 14, expansin A14 (.1)		Potri.003G223501 [exp]	10.24	0.9131
					Potri.008G224246 [exp]	12.68	0.9091
					Potri.018G003201 [exp]	13.49	0.8968
					Potri.008G224228 [exp]	13.56	0.9085
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052200 [exp]	14.38	0.6678
AT4G22820			A20/AN1-like zinc finger famil...		Potri.015G131500 [exp]	14.66	0.8147

Compare expression of checked genes

Potri.001G113800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.