Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 496 / 1e-172 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 476 / 1e-164 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 474 / 5e-164 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G61040 473 / 1e-163 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 470 / 3e-162 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT2G45570 463 / 8e-160 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT1G33730 376 / 1e-127 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT3G52970 376 / 1e-125 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT4G12300 369 / 1e-122 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 358 / 2e-118 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118200 [exp] 731 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 533 / 0 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 522 / 0 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 521 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 520 / 0 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 517 / 0 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 408 / 2e-138 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.015G138900 [exp] 389 / 9e-131 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 382 / 7e-128 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028897 [exp] 635 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 627 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 625 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10036079 [exp] 616 / 0 AT2G45550 481 / 5e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 615 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 608 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 597 / 0 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 593 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 588 / 0 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 580 / 0 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G113900.1 pacid=42787702 polypeptide=Potri.001G113900.1.p locus=Potri.001G113900 ID=Potri.001G113900.1.v4.1 annot-version=v4.1 ATGGAATCCTTGATAAATCTTCTGCTATGTGTTCTCTTCACATTTGTCTTGGTCAAGATACTTCATTTCATTGCGAGGGGAAGCAAAACTGAAAGTTCAG GAAAGCTTCCTCCAGGTCCAGCAGCTTTACCGATTATAGGCAGCCTCTTGGATCTTGGTGACAAACCTCACAAGTCTCTGGCAAGGCTTGCCAAGACTCA TGGTCCCTTGATGAGTTTGAAGTTAGGCCAAATCACCACAATAGTTATATCTTCCCCAACCCTGGCAAAAGAAGTCCTCCAAAAGCATGATGTCTCCTTT TCTAACCGAACCATTCCTGATGCACTTCGAGCTCACAAACATCATGAACTTGGTCTGCCTTGGGTGCCGATAGCCATGCGGTGGAGAAACCTTAGAAAGG TTTGCAACTCCTACATTTTCACTAATCAAAAACTCGACGCTAACCAAGACCTGAGGCGCAAGAAGATTCAAGAGCTGGTTGCTCTTGTTCAAGAACATTG CCTTGCTGGTGAGGCAATGGATATAGGCCAGGCAGCTTTTACAACCGCACTAAATGCCTTGTCAAATAGTATTTTTTCCTTGAATTTGTCTGATTCAAAT TCTGAAACTGCAAGTCAGTTAAAGGAGGTTGTTGGGGGTATCATGGAAGAGGCAGGAAAACCAAACTTAGCAGACTACTTCCCTGTACTTAGAAGGATTG ACCTGCAGGGCATAAAGCGTCGCATGACAATTCATTTTGGGAAGATACTCAACATCTTTGATGGCATAGTCAATGAACGGTTACAATTAAGAAAAATGCA GGGTTATGTCCCGGTCAATGACATGCTAGATACTCTTCTCACAATCAGCGAAGACAATAACGAGGACATCATGGAAACTAGTCAGATTAAACATTTGTTC TTGGATTTATTTGCTGCTGGTACAGATACAACTTCTAGCACACTGGAATGGGCTATGGCAGAACTACTCCACAATCCCAGGACATTATCTATAGCCCGAA CAGAGCTTGAGCAGACTATTGGAAAAGGCAGCTTGATTGAGGAATCAGACATTGTCCGGTTGCCTTATCTGCAAGCAGTTATCAAAGAAACCTTCAGATT GCATCCAGCAGTTCCTCTCTTACTCCCTCGGAAAGCTGGAGAGAATGTAGAAATAAGTGGTTACACTATCCCAAAAGGTGCACAATTGTTTGTTAATGCG TGGGCCATAGGTAGAGATCCAAGCTTATGGGAGGATCCAGAGTCATTCGTGCCGGAGAGATTCTTGGGGTCAGATATTGATGCCCGTGGCCGGAATTTTG AGCTTATTCCATTTGGTGCTGGACGAAGAATTTGCCCTGGATTGCCTTTGGCAATGAGGATGTTACACATGATGTTGGGTTCACTTATTCACTCTTTTGA TTGGAAGCTAGAAAATGGAGTGACACCAGAGAGCATGGACATGGAAGATAAGTTCGGCATCACCTTAGGGAAGGCTCGATCCCTGCGAGCCGTACCAATA CAATTGTAA
AA sequence Show only first row Show all	>Potri.001G113900.1 pacid=42787702 polypeptide=Potri.001G113900.1.p locus=Potri.001G113900 ID=Potri.001G113900.1.v4.1 annot-version=v4.1 MESLINLLLCVLFTFVLVKILHFIARGSKTESSGKLPPGPAALPIIGSLLDLGDKPHKSLARLAKTHGPLMSLKLGQITTIVISSPTLAKEVLQKHDVSF SNRTIPDALRAHKHHELGLPWVPIAMRWRNLRKVCNSYIFTNQKLDANQDLRRKKIQELVALVQEHCLAGEAMDIGQAAFTTALNALSNSIFSLNLSDSN SETASQLKEVVGGIMEEAGKPNLADYFPVLRRIDLQGIKRRMTIHFGKILNIFDGIVNERLQLRKMQGYVPVNDMLDTLLTISEDNNEDIMETSQIKHLF LDLFAAGTDTTSSTLEWAMAELLHNPRTLSIARTELEQTIGKGSLIEESDIVRLPYLQAVIKETFRLHPAVPLLLPRKAGENVEISGYTIPKGAQLFVNA WAIGRDPSLWEDPESFVPERFLGSDIDARGRNFELIPFGAGRRICPGLPLAMRMLHMMLGSLIHSFDWKLENGVTPESMDMEDKFGITLGKARSLRAVPI QL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.001G113900 [exp]	0	1
AT3G06760			Drought-responsive family prot...		Potri.011G057200 [exp]	2.64	0.7318
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108350 [exp]	7.74	0.6544
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G021000 [exp]	9.48	0.6807
					Potri.003G088100 [exp]	11.48	0.6738
AT1G68140			Protein of unknown function (D...		Potri.003G021800 [exp]	23.36	0.6005
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.013G143900 [exp]	25.03	0.6763	FGT1
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.014G113700 [exp]	33.63	0.6218
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.001G140000 [exp]	35.41	0.5905
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.005G145900 [exp]	38.23	0.5837	Pt-CKA1.2
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.014G113900 [exp]	38.67	0.5834

Compare expression of checked genes

Potri.001G113900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.