Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12500 482 / 1e-171 Nucleotide-sugar transporter family protein (.1) AT3G11320 360 / 3e-124 Nucleotide-sugar transporter family protein (.1) AT5G05820 357 / 2e-123 Nucleotide-sugar transporter family protein (.1) AT5G04160 334 / 4e-114 Nucleotide-sugar transporter family protein (.1) AT3G10290 329 / 1e-111 Nucleotide-sugar transporter family protein (.1) AT1G77610 147 / 6e-41 EamA-like transporter family protein (.1) AT1G21870 145 / 1e-40 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G25400 102 / 2e-24 Nucleotide-sugar transporter family protein (.1) AT4G32390 102 / 3e-24 Nucleotide-sugar transporter family protein (.1) AT5G11230 100 / 8e-24 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118000 [exp] 639 / 0 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 360 / 2e-124 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 358 / 7e-124 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 355 / 2e-122 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 344 / 4e-118 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 339 / 5e-116 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 314 / 4e-106 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 147 / 4e-41 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 143 / 2e-39 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007029 [exp] 473 / 1e-168 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 434 / 7e-154 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 363 / 1e-125 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 357 / 3e-123 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 357 / 6e-123 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 356 / 2e-122 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 345 / 5e-118 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 324 / 6e-110 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 324 / 8e-110 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 152 / 5e-43 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G114100.1 pacid=42789599 polypeptide=Potri.001G114100.1.p locus=Potri.001G114100 ID=Potri.001G114100.1.v4.1 annot-version=v4.1 ATGGTGGAGGCACAAACATGGGCAACAAGGAGAATGAGCAACCCAAGAATAATGGATGGCACCACCGTGTCAACCACCACCAATGACCAAGCTCTTGACA TACCTGCAACCCCACCTGGTGATGTAAGAAACAATGCATATTCTTCCGTTGGATCGTATTTTTCTCCGACTATTTTAACAGCTGGGATTATTGCATCATG GTACTTGTCCAACATTGGAGTCTTGTTACTTAACAAGTACTTGTTAAGTTTTCATGGCTACCGGTACCCGATATTTTTAACAATGCTGCACATGATTTCT TGTGCTTGTTATAGCTATGTGGCTATAAAATTTCTTCAAATAGTACCATTGCAGCATATTTCATCAAGAAAGCAGTTTATGAAGATCTTCGCTTTGAGTG CTATCTTTTGTTTCTCTGTGGTTTGTGGTAATACTTCATTGAGGTACTTGCCTGTGTCTTTTAATCAAGCTATTGGGGCAACCACACCTTTTTTTACTGC TATTTTTGCCTTCTTGATAACTTGCAAGAAAGAATCTGCTGGGGTTTATTGTGCACTTTTGCCTGTGGTTTTTGGGATTGTTTTGGCCAGTAATAGTGAG CCTTTGTTTCATTTATTTGGGTTCTTGGTCTGTGTTGGTTCAACTGCTGGACGTGCTTTAAAATCCGTGGTTCAAGGGATTTTGTTAACATCAGAAGCTG AGAAGTTACATTCTATGAATTTGTTGCTTTATATGGCACCAATGGCTGCTTTGATTTTGTTACCATTTACTCTTTACATAGAAGGGAATGTGGCTTCAAT TACGATTGAGAAAGCCAGAGGGGATCCGTATATTGTGTTCTTGTTGATTGGGAATTCAACTGTGGCTTATTTGGTGAATTTGACGAATTTTTTGGTGACC AAGCACACAAGTGCCCTGACTCTTCAAGTATTAGGCAATGCTAAGGCTGCCGTGGCTGCTGCCGTTTCGATCTTGATCTTTAGGAATCCGGTGACTGCGA TGGGAATGGTTGGATTCGCAGTTACAATCATGGGTGTGGTGCTTTACAGCGAGGCAAAGAAGAGATCTAAGGTCACAACTCACTGA
AA sequence Show only first row Show all	>Potri.001G114100.1 pacid=42789599 polypeptide=Potri.001G114100.1.p locus=Potri.001G114100 ID=Potri.001G114100.1.v4.1 annot-version=v4.1 MVEAQTWATRRMSNPRIMDGTTVSTTTNDQALDIPATPPGDVRNNAYSSVGSYFSPTILTAGIIASWYLSNIGVLLLNKYLLSFHGYRYPIFLTMLHMIS CACYSYVAIKFLQIVPLQHISSRKQFMKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAGVYCALLPVVFGIVLASNSE PLFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMAALILLPFTLYIEGNVASITIEKARGDPYIVFLLIGNSTVAYLVNLTNFLVT KHTSALTLQVLGNAKAAVAAAVSILIFRNPVTAMGMVGFAVTIMGVVLYSEAKKRSKVTTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12500			Nucleotide-sugar transporter f...		Potri.001G114100 [exp]	0	1
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.005G079200 [exp]	1.73	0.9415
AT5G42330			unknown protein		Potri.002G010400 [exp]	2.82	0.9299
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.017G130600 [exp]	3.00	0.9298
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.010G013500 [exp]	5.09	0.9392
AT5G20885			RING/U-box superfamily protein...		Potri.006G217000 [exp]	5.56	0.9151
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010800 [exp]	6.32	0.9196
AT5G58300			Leucine-rich repeat protein ki...		Potri.013G158800 [exp]	6.70	0.9240
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.008G094300 [exp]	8.00	0.9364
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.011G088100 [exp]	8.30	0.9387
AT1G12500			Nucleotide-sugar transporter f...		Potri.003G118000 [exp]	14.69	0.9126

Compare expression of checked genes

Potri.001G114100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.