Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12480 432 / 6e-149 SLAC1, RCD3, CDI3, OZS1 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) AT4G27970 273 / 2e-87 SLAH2 SLAC1 homologue 2 (.1) AT5G24030 270 / 6e-85 SLAH3 SLAC1 homologue 3 (.1) AT1G62280 171 / 1e-49 SLAH1 SLAC1 homologue 1 (.1) AT1G62262 170 / 2e-49 SLAH4 SLAC1 homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G026700 [exp] 176 / 4e-53 AT5G24030 367 / 3e-124 SLAC1 homologue 3 (.1) Potri.015G026801 [exp] 110 / 1e-27 AT5G24030 223 / 4e-68 SLAC1 homologue 3 (.1) Potri.002G227800 [exp] 91 / 3e-20 AT1G62280 120 / 7e-31 SLAC1 homologue 1 (.1) Potri.010G170050 [exp] 81 / 4e-18 AT1G62280 136 / 7e-39 SLAC1 homologue 1 (.1) Potri.012G035300 [exp] 61 / 8e-11 AT5G24030 172 / 1e-50 SLAC1 homologue 3 (.1) Potri.008G084901 [exp] 53 / 3e-08 AT1G62280 117 / 3e-32 SLAC1 homologue 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006678 [exp] 412 / 1e-140 AT1G12480 734 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10007023 [exp] 404 / 6e-138 AT1G12480 720 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10039312 [exp] 295 / 1e-94 AT5G24030 670 / 0.0 SLAC1 homologue 3 (.1) Lus10027553 [exp] 295 / 2e-94 AT5G24030 669 / 0.0 SLAC1 homologue 3 (.1) Lus10024306 [exp] 175 / 3e-51 AT1G62280 349 / 7e-119 SLAC1 homologue 1 (.1) Lus10015133 [exp] 165 / 5e-47 AT1G62280 387 / 6e-133 SLAC1 homologue 1 (.1) Lus10031545 [exp] 48 / 3e-06 AT1G62280 160 / 3e-48 SLAC1 homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03595 [poplar] [flax] SLAC1 Voltage-dependent anion channel
Representative CDS sequence Show only first row Show all	>Potri.001G114300.2 pacid=42788797 polypeptide=Potri.001G114300.2.p locus=Potri.001G114300 ID=Potri.001G114300.2.v4.1 annot-version=v4.1 ATGGCCCGGCAAGGGCGGCAATGGCACCATAAAATTCTTGAATTTGCAGCAATTGGCAACAACAATATTGCCAAGCAAGACCGAGATGCTGTGGTAACGT CTAGGCCTGAAAGTGGAGATGAAGTATCAGGCCTTACTTTTGATTATGAGGACATTCTCCTTCCCAGAGATAAGAAATGGCCTTTTCTCCACAGATTTTC AATCGGTTGCTTTGCAAGTCCAGCTACCCAGTTTCTCCACATAATACCATTCATCAACCTTGCCCTCTGGCTCTTAGCTCTTGCGATCCTAATTTATGTT TCTTTCACCTACATTCTCAAATGCATATTCTACTTTGAAGCTGTCAAGAGAGAGTACTTTCACCCTGTCCGTGTCAACTTTTTCTTTGCTCCATGGGTTG TGTGCATGTTCCTGGCCAATAGTGTACCCCCTCTGCTAGCACCTGAAAATTTGCATCCTGCCCTTTGGTGCGCCTTCATGGGACCTTACTTCTTCCTTGA GCTCAAGATCTATGGCCAATGGCTATCAGGTGGAAAGAGGCGTCTTTGCAAGGTAGCTAATCCATCTTCTCATCTCTCTGTAGTTGGAAATTTTGTTAGG GCAATTTTAGCCTCTAAAGTTGGGTGGAAGGAGGCAGCTAAGTTGTGGGCAGTAGGCTTTGCACATTACCTTGTGGTGTTCGTCACATTGTATCAGAGAT TGCCAACAAGCGAACCATTGCCTAAGGAGCTCCATCCCGTGTACTCTATGTTCATTGCAGCCCCATCTCCTGCAAGCATTGCTTGGGAAACTATATATGG TGATTTTGATGGGCTGTCTAGGACGTTTTCAGTGGCATTGTGGTCTTATACCTTCCCCATGACAACAGCATCAGTGACAACAATCAAGTACGCAGAGAAT GTCCCTGGTGTTCTAAGCAAGGGCCTTGCACTTGCACTTTCTTTCATGTCATCAACGATGGTGGTGGTATTGCTTGTATTCACCCTTCTGCACGCTTTTG TTTGGCACACATTATTTCCCAATGATGTTGCCGTTGCCGTTGCCATTGCCATGAAAAAGAGAAGACTCGTCAAGGAAAAGAAACCCTTCGAGGAAGCCTG TGATATATAG
AA sequence Show only first row Show all	>Potri.001G114300.2 pacid=42788797 polypeptide=Potri.001G114300.2.p locus=Potri.001G114300 ID=Potri.001G114300.2.v4.1 annot-version=v4.1 MARQGRQWHHKILEFAAIGNNNIAKQDRDAVVTSRPESGDEVSGLTFDYEDILLPRDKKWPFLHRFSIGCFASPATQFLHIIPFINLALWLLALAILIYV SFTYILKCIFYFEAVKREYFHPVRVNFFFAPWVVCMFLANSVPPLLAPENLHPALWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVR AILASKVGWKEAAKLWAVGFAHYLVVFVTLYQRLPTSEPLPKELHPVYSMFIAAPSPASIAWETIYGDFDGLSRTFSVALWSYTFPMTTASVTTIKYAEN VPGVLSKGLALALSFMSSTMVVVLLVFTLLHAFVWHTLFPNDVAVAVAIAMKKRRLVKEKKPFEEACDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Potri.001G114300 [exp]	0	1
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.010G237800 [exp]	2.00	0.8727
AT2G37110			PLAC8 family protein (.1)		Potri.006G130300 [exp]	7.68	0.7101
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.016G046200 [exp]	9.79	0.8127	FAD2.3
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Potri.009G003100 [exp]	17.66	0.7859
AT1G19530			unknown protein		Potri.002G034500 [exp]	17.74	0.8022
AT2G41475			Embryo-specific protein 3, (AT...		Potri.006G069800 [exp]	17.88	0.7072
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177600 [exp]	22.18	0.8030
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Potri.001G205200 [exp]	23.23	0.7850	Pt-PIN2.1,PIN10
AT4G33180			alpha/beta-Hydrolases superfam...		Potri.006G219400 [exp]	28.46	0.7498
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Potri.013G147300 [exp]	30.29	0.7264

Compare expression of checked genes

Potri.001G114300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.