Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22860 353 / 3e-117 Cell cycle regulated microtubule associated protein (.1.2) AT4G11990 319 / 7e-104 Cell cycle regulated microtubule associated protein (.1) AT1G03780 142 / 4e-36 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT5G07170 130 / 2e-33 Cell cycle regulated microtubule associated protein (.1) AT5G62240 109 / 5e-26 Cell cycle regulated microtubule associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117800 [exp] 747 / 0 AT4G22860 377 / 8e-126 Cell cycle regulated microtubule associated protein (.1.2) Potri.012G130300 [exp] 171 / 3e-48 AT4G22860 164 / 2e-45 Cell cycle regulated microtubule associated protein (.1.2) Potri.007G138600 [exp] 120 / 6e-29 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.017G013100 [exp] 116 / 2e-27 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006677 [exp] 413 / 1e-139 AT4G22860 345 / 5e-113 Cell cycle regulated microtubule associated protein (.1.2) Lus10007022 [exp] 253 / 7e-80 AT4G22860 209 / 3e-63 Cell cycle regulated microtubule associated protein (.1.2) Lus10018608 [exp] 132 / 1e-32 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10031690 [exp] 122 / 1e-30 AT4G22860 117 / 2e-29 Cell cycle regulated microtubule associated protein (.1.2) Lus10031109 [exp] 123 / 2e-30 AT5G07170 124 / 6e-31 Cell cycle regulated microtubule associated protein (.1) Lus10039844 [exp] 124 / 7e-30 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 85 / 4e-17 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10033674 [exp] 84 / 8e-17 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12214 [poplar] [flax] TPX2_importin Cell cycle regulated microtubule associated protein
Representative CDS sequence Show only first row Show all	>Potri.001G114400.2 pacid=42792890 polypeptide=Potri.001G114400.2.p locus=Potri.001G114400 ID=Potri.001G114400.2.v4.1 annot-version=v4.1 ATGGAAATGGAAGAGAAAATGGAGGTGGAGTTTATGGTGTTTGAGGCGCGTGAAATTGATCTTGATTACGAGTTTGATGCTCCAAAGTACTTCGATTTCA CTAGCCTGGAGTCAATCGCGGAGGCGCGTGAGGTTCAGCGGTGGTTTGATACGGCGCCGAGCTGTCCTCCCTCTCCATTTGTGGCAAAGTTTGTGTACAG TCTACTGGAGAATGTTAATACCTCTCCAAAATCTAAAGATGAGGAAAATAGGGCTCCTCTGCTTAATGATGACATGGGACCAGAAGTTTCTGCAATAGAG GTGGACGATACAGGATTGACTTTTTACCATCAGAAATCTACTGATAAATCAAACCCCAAGGTGAAGTCCATGGTCAAGCCAACATTTCCCAGGAGTTCAA CTTTGATGAAACCTACGGCTAGTCAGTTGGCTAAGCAAAATCGCCCCACTCAAATAGGTGTTTCCAGATTTCAGATACTGCTGGGTCAAAAGGAGAGAAG CTTATGCAATTCTTCTGCACTTGAAAGTCATTCTGCCAAGAGGCAGAAACTGGAAGGAGGTCACGTTTGCAAGATTGGTGATGGAAAGCAGAAAACAGAT TTCATCCACAAGACATCTAAAAAGGATGGTTTTGTTGATAAAATCTCTTCTCATGCAAAACTAAGGCTGACTGTTCCAAGAGAGCCTGACCTTGTAACAG CACACAGGGCACAGAGGATGAGGCCCAAAGAACAGCAATACATGACAGCGCCTGCACGAAGATTCAAAGCACGCCCATTGAACCAAAAAATTCTTGAGGC TCCTTCATTTCCTCTTCCAAAGAAGAGTACCCCAAAGTTGCCAGAGTTTCAAGAATTTCACTTGAAGACATTAGAAAGGGCAATGCAGCACAACTCTTCA GTTTCATCTTCCTCGTTTCAGTGCAATGATTCAAACAAGGGGCTGGATAAACCCAGTACAATTTCAGAAAGTGTGAAGACAGAATCCAGAAGACCAACCA CCAAGAATCCTCCAAAGCAAGATGGATGTGGTGCAACACATACATTCAAAGCTTGCCCTCTGAATAAGAAGATATTCTCTAGTAAAGGAGAAATGGGTGT TTTTCAAACTAGCATTCGGGAAACCACGGTGCCAATGGAATTTAATTTTCATACGGAGAAGAGGTTTCAACATAATCCACCCATAGATCTTTTCAGTAAG CTCTCCCTGACAAGTGAACTCCAACCAAATAACAAATCTCAATTGCAATTTCCTCAACCAAGCTATCTGTCTACGAAGGGTCCAAAAGAAAATAGATTGA ATCCCTTGCAAACAGAGCAGAAGATGGTGCATTTGGTGAAAGAAAGGCAATCTATATTTGGTGGAAAGCAGCAGATTCAATATGGGAGCAATATGGGCAC CAATGAAGTCAGAAACCAATCGATCAGGAGGAGCTTGGGCATCCGGTGA
AA sequence Show only first row Show all	>Potri.001G114400.2 pacid=42792890 polypeptide=Potri.001G114400.2.p locus=Potri.001G114400 ID=Potri.001G114400.2.v4.1 annot-version=v4.1 MEMEEKMEVEFMVFEAREIDLDYEFDAPKYFDFTSLESIAEAREVQRWFDTAPSCPPSPFVAKFVYSLLENVNTSPKSKDEENRAPLLNDDMGPEVSAIE VDDTGLTFYHQKSTDKSNPKVKSMVKPTFPRSSTLMKPTASQLAKQNRPTQIGVSRFQILLGQKERSLCNSSALESHSAKRQKLEGGHVCKIGDGKQKTD FIHKTSKKDGFVDKISSHAKLRLTVPREPDLVTAHRAQRMRPKEQQYMTAPARRFKARPLNQKILEAPSFPLPKKSTPKLPEFQEFHLKTLERAMQHNSS VSSSSFQCNDSNKGLDKPSTISESVKTESRRPTTKNPPKQDGCGATHTFKACPLNKKIFSSKGEMGVFQTSIRETTVPMEFNFHTEKRFQHNPPIDLFSK LSLTSELQPNNKSQLQFPQPSYLSTKGPKENRLNPLQTEQKMVHLVKERQSIFGGKQQIQYGSNMGTNEVRNQSIRRSLGIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103400 [exp]	1.73	0.8672
AT2G33680			Tetratricopeptide repeat (TPR)...		Potri.013G006800 [exp]	3.46	0.8785
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.010G189700 [exp]	3.74	0.8864
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.017G033000 [exp]	5.91	0.8638
AT3G10630			UDP-Glycosyltransferase superf...		Potri.008G018200 [exp]	6.92	0.8649
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.008G150100 [exp]	8.30	0.8388
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.014G144900 [exp]	9.16	0.8616	Pt-KUP3.1
AT3G19740			P-loop containing nucleoside t...		Potri.005G093300 [exp]	9.16	0.8610
AT2G31290			Ubiquitin carboxyl-terminal hy...		Potri.005G191100 [exp]	9.38	0.8398
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	9.94	0.8581

Compare expression of checked genes

Potri.001G114400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.