Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12460 1076 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 1039 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G01890 435 / 2e-137 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28040 410 / 1e-127 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07180 369 / 1e-112 ERL2 ERECTA-like 2 (.1) AT5G62230 360 / 8e-110 ERL1 ERECTA-like 1 (.1.2) AT2G26330 358 / 9e-109 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 357 / 2e-108 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G63930 360 / 4e-108 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 359 / 7e-108 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117500 [exp] 1492 / 0 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 491 / 6e-159 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G091000 [exp] 480 / 9e-155 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 451 / 9e-144 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 441 / 1e-139 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.014G147300 [exp] 438 / 3e-138 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 430 / 4e-135 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 375 / 9e-114 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G130400 [exp] 372 / 1e-113 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006675 [exp] 1102 / 0 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007019 [exp] 612 / 0 AT1G62950 553 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10007020 [exp] 492 / 2e-167 AT1G12460 435 / 2e-146 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 464 / 1e-148 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 463 / 3e-148 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014174 [exp] 426 / 4e-134 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10022738 [exp] 421 / 4e-132 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 365 / 3e-111 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031689 [exp] 363 / 5e-110 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 361 / 1e-109 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G114500.2 pacid=42787610 polypeptide=Potri.001G114500.2.p locus=Potri.001G114500 ID=Potri.001G114500.2.v4.1 annot-version=v4.1 ATGATTGTGCTCTTGTGTTTCTCAATGCGAGTGCTGCAAGAATACCCCGATCCTGTTTCAATTGGATCCACCATCAATAATGCCAAAGGGCTAGATCTAT TTATCAACATTTATTCAGTGAGCATGAGAAGATTGTATCGATTGTGTCTTTCCCATGCTCTTTTGCTCTTAATTTCTCTCTACCTTGGATTCGCTGCCAC TACAGTTTCACCAGCTACTGAGAAGGAGATCTTGCTGCAATTCAAGGGTAACATCAGTAATGACCCTTACAACAGCTTGGCTAATTGGGTCCCAAGTAGC AATCCTTGTAACTACAATGGCGTGTTCTGCAACCCTCTTGGTTTTGTAGAGAGAATTGTTTTGTGGAACACAAGCTTATCTGGGGTTTTGTCACCAGCAT TATCAGGTTTGAGATCTTTAAGAATTTTGACATTTTTTGGCAATCAATTTACAGGCAATATCCCTCAAGAATATGCCGAATTAAGCACTTTGTGGAAGAT AAATCTGAGTTCTAATGCCTTATCTGGGTCAATACCAGAATTCATTGGTGATTTGCAAAGGATTAGATTTCTTGATTTGTCAAGGAATGGTTACACTGGG GAGATTCCATTTGCTTTGTTCAAGTTTTGTTACAAGACCAAGTTTGTTTCTTTTTCTCATAATAGTCTCTCTGGTCCAGTCCCTGCTTCAATTGCAAATT GTACTAATCTTGAAGGGTTTGATTTCTCTTTCAATAATCTTAGTGGTCAATTGCCTTCTGGGATTTGTGATGTTCCTGTATTAGAGTACATGTCTTTGAG GAGCAATGTGCTAACCGGGAGTGTGCTTGAAGAGATTTCAAATTGCCAAAGATTGAGTTTTTTGGATCTTGGCAGCAATATGTTTACTGGGCTGGCTCCA TTTGGAATTCTTGGATTGCAAAACTTGAGCTACTTCAATTTATCACATAATGGGTTTCAAGGGGGGATTCCAGAGGTGAGAACTTGCAGTGAAAGTCTAA AATTCTTTGATGCTTCAAGTAATGAACTGGAAGGTGAAATCCCTTTGGGCATTACAAACTGCAAAAGCCTTGAATTTATCGACTTGGGATTTAACAGGCT GAATGGGAGTATCCCAGTTGGGATCGCCAATTTGGAGAGGCTTTTGGTTTTTAAATTGGGCAACAATTCAATAAAGGGGACAATCCCTAGAGAATTTGGA AGCATTGAGTTGCTGCTCCTTCTGGATTTGCACAACCTCAATCTTGCTGGTGAAATTCCTAAAGATATCAGCAACTGCAGGTTTCTTCGTGAGCTGGATG TTTCTGGAAATGCATTAGATGGAGAAATTCCCAACACCCTTGACAATTTGACGTCTCTAGAAGTCCTTGATTTACATAGAAACCAGCTTGATGGAGGCAT ACCGGAGACTCTAGGAAGCCTATCAAACCTCAAACTTCTTGACTTGTCACAAAACAACCTTTCTGGGAACATTCCATTTTCTCTTGGAAATTTGGCCAAC TTAAAATTTTTCAATGTCTCCTCCAACAACCTTTCAGGTCCCATTCCTTCAATACCAAAAATCCAGGCTTTTGGCGCAGCTGCATTTCTTAACAATTCTA GGCTCTGTGGGACACCTTTGGATATCTCTTGCTCAGGAGGTGGCAATGGCACAGGTAACAAATCGAAGAAAAACAAGGTGCTCAGCAACTCTGTTATTGT GGCAATTGTTGCTGCCGCACTGATCCTTACTGGGGTTTGTGTGGTATCAATCATGAACATCAGGGCACGCAGCAGGAAAAAAGACGATGTGACAACTGTA GTTGAGAGTACTCCATTGGGTTCAACAGATTCAAATGTTATAATTGGGAAGCTGGTTCTGTTCAGCAAGACTTTGCCATCAAAGTACGAAGATTGGGAGG CTGGAACCAAAGCTTTGCTAGACAAGGAATGTTTAATCGGTGGTGGATCAATTGGAACAGTCTACAGAACTACTTTTGAAGGCGGGGTTTGTATTGCAGT GAAGAAGCTTGAGACTCTGGGTAGGATCAGAAGCCAAGATGAATTTGAGCAAGAAATTGGACGGTTAGGTAACCTTCGACATCCCAATTTGGTTGCATTT CAAGGGTATTACTGGTCTTCAACAATGCAGTTAATTTTGTCTGAATTTATTCCTCATGGTAATCTATATGACAATCTGCATGGGCTTAATTATCCGGGAA CCAGTACTGGTGTTGGGAACAGAGAATTATACTGGTCCAGGAGGTTTCAAATTGCTCTCTTAACAGCTAGGGCTCTTTCTTATCTTCACCATGACTGTAG GCCTCCAATTCTCCATCTCAACATCAAATCTACTAACATACTATTAGATGAAAATTACGAGGCCAAGTTGTCTGATTATGGGTTGGGGAAGTTGCTCCCC ATTTTGGACAATTATGGTTTAACAAAATTCCACAATGCAGTAGGGTATGTTGCACCAGAGTTGGCTCAGAGTCTAAGATTAAGTGATAAATGTGACGTGT ATAGTTTTGGAGTGATTCTTTTGGAGCTGGTTACTGGGAGGAAACCGGTGGAGAGTCCTACAGCAAATGAGGTGGTGGTTCTGTGTGAATATGTTCGCGG GTTGTTGGAGACTGGCTCTGCTTCAGATTGCTTTGATAGAAGTTTGCGAGGTTTTTCAGAGAATGAGTTGATTCAAGTCATGAAGTTAGGATTGATTTGT ACATCTGAGCTTCCTTCAAGAAGACCTAGCATGGCTGAGGTTGTTCAGGTCCTCGAGTCCATAAGGTCTGGAGTAGAATCATCGTAG
AA sequence Show only first row Show all	>Potri.001G114500.2 pacid=42787610 polypeptide=Potri.001G114500.2.p locus=Potri.001G114500 ID=Potri.001G114500.2.v4.1 annot-version=v4.1 MIVLLCFSMRVLQEYPDPVSIGSTINNAKGLDLFINIYSVSMRRLYRLCLSHALLLLISLYLGFAATTVSPATEKEILLQFKGNISNDPYNSLANWVPSS NPCNYNGVFCNPLGFVERIVLWNTSLSGVLSPALSGLRSLRILTFFGNQFTGNIPQEYAELSTLWKINLSSNALSGSIPEFIGDLQRIRFLDLSRNGYTG EIPFALFKFCYKTKFVSFSHNSLSGPVPASIANCTNLEGFDFSFNNLSGQLPSGICDVPVLEYMSLRSNVLTGSVLEEISNCQRLSFLDLGSNMFTGLAP FGILGLQNLSYFNLSHNGFQGGIPEVRTCSESLKFFDASSNELEGEIPLGITNCKSLEFIDLGFNRLNGSIPVGIANLERLLVFKLGNNSIKGTIPREFG SIELLLLLDLHNLNLAGEIPKDISNCRFLRELDVSGNALDGEIPNTLDNLTSLEVLDLHRNQLDGGIPETLGSLSNLKLLDLSQNNLSGNIPFSLGNLAN LKFFNVSSNNLSGPIPSIPKIQAFGAAAFLNNSRLCGTPLDISCSGGGNGTGNKSKKNKVLSNSVIVAIVAAALILTGVCVVSIMNIRARSRKKDDVTTV VESTPLGSTDSNVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYRTTFEGGVCIAVKKLETLGRIRSQDEFEQEIGRLGNLRHPNLVAF QGYYWSSTMQLILSEFIPHGNLYDNLHGLNYPGTSTGVGNRELYWSRRFQIALLTARALSYLHHDCRPPILHLNIKSTNILLDENYEAKLSDYGLGKLLP ILDNYGLTKFHNAVGYVAPELAQSLRLSDKCDVYSFGVILLELVTGRKPVESPTANEVVVLCEYVRGLLETGSASDCFDRSLRGFSENELIQVMKLGLIC TSELPSRRPSMAEVVQVLESIRSGVESS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12460			Leucine-rich repeat protein ki...		Potri.001G114500 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Potri.015G049100 [exp]	5.09	0.8562
AT2G46710			Rho GTPase activating protein ...		Potri.014G103600 [exp]	6.63	0.8834
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.005G237700 [exp]	7.14	0.8948
AT3G57070			Glutaredoxin family protein (....		Potri.006G041800 [exp]	11.40	0.8427
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Potri.001G354900 [exp]	12.96	0.8850
AT2G03350			Protein of unknown function, D...		Potri.008G092500 [exp]	15.42	0.8930
AT5G66310			ATP binding microtubule motor ...		Potri.007G014800 [exp]	18.30	0.8823
AT1G05170			Galactosyltransferase family p...		Potri.014G153700 [exp]	20.39	0.8728
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G019000 [exp]	29.39	0.8542
AT1G65020			unknown protein		Potri.013G079201 [exp]	30.39	0.8683

Compare expression of checked genes

Potri.001G114500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.