Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22850 316 / 3e-108 SNARE associated Golgi protein family (.1.2) AT1G12450 316 / 3e-108 SNARE associated Golgi protein family (.1) AT4G12000 300 / 7e-102 SNARE associated Golgi protein family (.1) AT2G02370 204 / 5e-64 SNARE associated Golgi protein family (.1.2) AT1G03260 61 / 2e-10 SNARE associated Golgi protein family (.1) AT1G22850 52 / 2e-07 SNARE associated Golgi protein family (.1) AT5G19070 45 / 2e-05 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117400 [exp] 480 / 5e-173 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 198 / 9e-62 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G151800 [exp] 191 / 8e-59 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.019G071900 [exp] 50 / 5e-07 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 50 / 6e-07 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007018 [exp] 339 / 4e-117 AT1G12450 364 / 6e-127 SNARE associated Golgi protein family (.1) Lus10006674 [exp] 335 / 1e-115 AT1G12450 365 / 4e-127 SNARE associated Golgi protein family (.1) Lus10008915 [exp] 318 / 4e-109 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1) Lus10028900 [exp] 306 / 5e-104 AT1G12450 348 / 9e-121 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 206 / 8e-65 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2) Lus10007583 [exp] 182 / 2e-55 AT2G02370 399 / 2e-140 SNARE associated Golgi protein family (.1.2) Lus10041062 [exp] 56 / 1e-08 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10006162 [exp] 56 / 2e-08 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 51 / 4e-07 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10028709 [exp] 45 / 4e-05 AT1G44960 305 / 5e-105 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [poplar] [flax] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Potri.001G114600.1 pacid=42791114 polypeptide=Potri.001G114600.1.p locus=Potri.001G114600 ID=Potri.001G114600.1.v4.1 annot-version=v4.1 ATGACTTATTATGAGGATGACAGTGTGGTGCTAGATGTAAGGATGAGAATGGAGGGTGATAAAATTGATGATAACAGCAAAGGGGATTATGTGAACTTGA GAGACGAGAATGGGGCTGGTGAAAGGTGTAATCATTTTGGTTGTTGTTGGGGGCTTGGAGGGTCTGTGTTCTGGTATTGGGTTAAGTTGGCTGTGACTTT TACGTTTTTTGGGTTATTGGCTGCTGCTTGTGTCGAGTGGGTTGGCCCCTTTCTGATGGATAAGGAGATAATCCCTATCATAAATTGGGAGACAACGACT TTTAGCACTCCAGTACTAGTGGTTCTGCTCTTTGCCTCTGTGGCATTGTTACCAACTCTACTTCTACCATCGTCTCCTTCTATGTGGGTGGCTGGGATGA CATTTGGTTACGGGTTTGGATTTCTATTAATAATAACTGCAGCGGCTGTGGGTGTGTCACTTCCATATTTCATTGGCTCTTTGTTCCTTCATAAAATCAG AGGGTGGTTTGACAAATATCCAAAGAGAGCTGCTATTTTGAGAGCAGCTGGTGAAGGAAACTGGTTTCATCAGTTTCGAGCTGTGGCTCTGATCAGGATT TCTCCATTTCCATATATTCTGTATAATTACTGTGCTGTTGCAACAAATGTTAAGTATGGGCCTTACTTCTTGGGATCATTGGCAGGAATGGTGCCAGAGA TTTTCGTTGCAATGTATACTGGGATTGTCATTAGGACCTTGGCAGATGCATCAAATGACCGGCATGCTCTCTCGGCTCAACAAATTGTCTTCACGGTATT TGGTTTCTGTGCCACGGTGGTTGCCACAATTATCATCACTGTGTATGCCAAAAGGCAGCTCAAGGTGATGCAGGATGAACCATTACTGGCATAG
AA sequence Show only first row Show all	>Potri.001G114600.1 pacid=42791114 polypeptide=Potri.001G114600.1.p locus=Potri.001G114600 ID=Potri.001G114600.1.v4.1 annot-version=v4.1 MTYYEDDSVVLDVRMRMEGDKIDDNSKGDYVNLRDENGAGERCNHFGCCWGLGGSVFWYWVKLAVTFTFFGLLAAACVEWVGPFLMDKEIIPIINWETTT FSTPVLVVLLFASVALLPTLLLPSSPSMWVAGMTFGYGFGFLLIITAAAVGVSLPYFIGSLFLHKIRGWFDKYPKRAAILRAAGEGNWFHQFRAVALIRI SPFPYILYNYCAVATNVKYGPYFLGSLAGMVPEIFVAMYTGIVIRTLADASNDRHALSAQQIVFTVFGFCATVVATIIITVYAKRQLKVMQDEPLLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12450			SNARE associated Golgi protein...		Potri.001G114600 [exp]	0	1
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Potri.008G103900 [exp]	2.44	0.7763	Pt-CP1.2
AT1G25682			Family of unknown function (DU...		Potri.010G130300 [exp]	4.35	0.7037
AT4G00300			fringe-related protein (.1.2)		Potri.014G088100 [exp]	9.16	0.7491
AT5G08750			RING/FYVE/PHD zinc finger supe...		Potri.005G070100 [exp]	9.48	0.6868
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Potri.010G146900 [exp]	17.49	0.7055	Pt-CP1.1
AT3G47300		SELT	SELT-like protein precursor (....		Potri.009G047000 [exp]	18.33	0.7216
AT2G23780			RING/U-box superfamily protein...		Potri.007G031600 [exp]	19.13	0.6581
AT1G70590			F-box family protein (.1)		Potri.010G045300 [exp]	20.73	0.7198
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	25.45	0.7423
AT4G20330			Transcription initiation facto...		Potri.001G107500 [exp]	26.43	0.7598

Compare expression of checked genes

Potri.001G114600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.