Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60890 56 / 2e-11 ZPR2 LITTLE ZIPPER 2, protein binding (.1.2) AT2G45450 38 / 0.0002 ZPR1 LITTLE ZIPPER 1, protein binding (.1) AT3G52770 37 / 0.0002 ZPR3 LITTLE ZIPPER 3, protein binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117200 [exp] 161 / 4e-53 AT3G60890 63 / 4e-14 LITTLE ZIPPER 2, protein binding (.1.2) Potri.014G071200 [exp] 59 / 1e-12 AT3G60890 62 / 1e-13 LITTLE ZIPPER 2, protein binding (.1.2) Potri.002G149600 [exp] 57 / 2e-11 AT3G60890 65 / 1e-14 LITTLE ZIPPER 2, protein binding (.1.2) Potri.006G083201 [exp] 47 / 2e-07 AT3G52770 54 / 2e-10 LITTLE ZIPPER 3, protein binding (.1) Potri.010G237600 [exp] 39 / 3e-05 AT3G52770 49 / 7e-10 LITTLE ZIPPER 3, protein binding (.1) Potri.008G021766 [exp] 37 / 0.0003 AT3G52770 51 / 1e-10 LITTLE ZIPPER 3, protein binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028902 [exp] 90 / 2e-24 AT3G60890 59 / 1e-12 LITTLE ZIPPER 2, protein binding (.1.2) Lus10008913 [exp] 84 / 3e-22 AT3G60890 58 / 2e-12 LITTLE ZIPPER 2, protein binding (.1.2) Lus10006673 [exp] 73 / 6e-18 AT3G60890 47 / 4e-08 LITTLE ZIPPER 2, protein binding (.1.2) Lus10007017 [exp] 61 / 4e-13 AT3G60890 48 / 3e-08 LITTLE ZIPPER 2, protein binding (.1.2) Lus10021375 [exp] 45 / 3e-07 AT3G52770 77 / 3e-20 LITTLE ZIPPER 3, protein binding (.1) Lus10017055 [exp] 45 / 4e-07 AT3G52770 77 / 5e-20 LITTLE ZIPPER 3, protein binding (.1) Lus10022725 [exp] 43 / 1e-06 AT3G52770 73 / 5e-19 LITTLE ZIPPER 3, protein binding (.1) Lus10014188 [exp] 42 / 3e-06 AT3G52770 72 / 1e-18 LITTLE ZIPPER 3, protein binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G114900.1 pacid=42788341 polypeptide=Potri.001G114900.1.p locus=Potri.001G114900 ID=Potri.001G114900.1.v4.1 annot-version=v4.1 ATGTGCACTAACGGAGTAGAGAGGTTCCCTTCTCCTTTCCACCCTTCAAAAAGAAGGCAAAGATCAAAGAAATGTAAGGTTCAAGTTATTGGGCTCACCT GCAGGAGGTCAGGATATGAAGAAATGGAGGGGAAGGACATGGAGCTAAAGAACTTGAAGTTGTGTTTAGAGAACCAAAGAATCGTTGAAGAGAACGAGAA GCTGAGGAAGAAAGCTAATCTTCTCCGCCAAGAAAACTTGGCCTTAATGTCTGAATTTCAAAAGAAATTCCCTCATTTGGATCGCTTATCCACCACCCTA CTTCTTTTACACAACACTAGCAAAATGTAA
AA sequence Show only first row Show all	>Potri.001G114900.1 pacid=42788341 polypeptide=Potri.001G114900.1.p locus=Potri.001G114900 ID=Potri.001G114900.1.v4.1 annot-version=v4.1 MCTNGVERFPSPFHPSKRRQRSKKCKVQVIGLTCRRSGYEEMEGKDMELKNLKLCLENQRIVEENEKLRKKANLLRQENLALMSEFQKKFPHLDRLSTTL LLLHNTSKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.001G114900 [exp]	0	1
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.001G302600 [exp]	1.73	0.8047
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	4.00	0.7875
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.007G040800 [exp]	5.47	0.7552
					Potri.001G135100 [exp]	5.65	0.7933
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.001G099700 [exp]	6.00	0.7381
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G027500 [exp]	6.48	0.7467
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Potri.006G247500 [exp]	6.70	0.7277
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	13.60	0.7760	ATHB.11
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040600 [exp]	18.43	0.6988
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.014G017500 [exp]	20.49	0.7933

Compare expression of checked genes

Potri.001G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.