Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PAK.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12430 1325 / 0 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT1G01950 1247 / 0 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT3G54870 531 / 9e-175 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT3G63480 209 / 8e-59 ATP binding microtubule motor family protein (.1.2) AT2G37420 205 / 2e-54 ATP binding microtubule motor family protein (.1) AT2G28620 204 / 6e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 199 / 2e-52 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT3G45850 196 / 2e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G27000 195 / 3e-51 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G59540 192 / 2e-50 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117000 [exp] 1635 / 0 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.002G149400 [exp] 1292 / 0 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.014G070900 [exp] 1291 / 0 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.010G227000 [exp] 561 / 0 AT3G54870 938 / 0.0 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.008G035400 [exp] 281 / 3e-88 AT3G54870 345 / 8e-113 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.005G038900 [exp] 214 / 2e-60 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.016G082400 [exp] 213 / 6e-57 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 210 / 6e-56 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G026000 [exp] 202 / 3e-53 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007014 [exp] 1385 / 0 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10009241 [exp] 1259 / 0 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10006670 [exp] 1243 / 0 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10038007 [exp] 1177 / 0 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10038696 [exp] 535 / 6e-175 AT1G01950 966 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10037965 [exp] 530 / 9e-172 AT1G01950 920 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10024429 [exp] 215 / 3e-57 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 213 / 4e-57 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10009073 [exp] 210 / 9e-56 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 208 / 3e-55 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.001G115100.1 pacid=42791478 polypeptide=Potri.001G115133.1.p locus=Potri.001G115100 ID=Potri.001G115100.1.v4.1 annot-version=v4.1 ATGGCTACTACGGCAAGTATTTATAGAAATGGCAATTACAGTAAGAATTCACTTATCACTAACAATAACAAAGTGGAGAGGCCTCCCTCTGTCAATTCAA ACCCTAAAAACTCACTTAAATCCAAGTCATTACGTAAGAGCGCTCCTGCTGCTCTTGGCGCTGCTAAAGATGACACTGGAGTTCCTGGAAGAGTTAGGGT AGCAGTGAGATTGCGACCGCGAAATGCAGAGGAAATGGTAGCTGATGCTGATTTTGCTGACTGTGTAGAATTACAGCCTGAGGTTAAGAGGTTGAAACTT CGGAAGAACAACTGGGATTCTGATACATATGAGTTTGATGAATTGCTGACTGAGTTTGCATCGCAAAAACGTGTTTATGAAGTTGTGGCAAAGCCTGTTG TAGAGAGTGTTCTGGATGGATACAATGGGACAGTCATGGCATATGGGCAGACTGGTACCGGTAAAACATATACTCTTGGACGGCTTGGAGAGGAAGACAC AGCTGCTCGTGGAATTATGGTTCGTGCTATGGAGGACATATTAGCAGATGTTTCTCTAGAGACCAATTCTGTCTCAATATCCTATCTGCAGCTTTATATG GAGACCATACAAGACCTCCTCAATCCCACTAATGACAATATTTCTATTGTGGAAGACCCAAAAAGTGGAGATGTTTCGCTTCCTGGGGCTAGCCTAGTTG AAATAAGGAATCAGCAGAGCTTTGTTGAACTATTGCGACTAGGAGAAGCTCACCGCTTCGCTGCAAATACAAAATTGAATGCCGAATCATCCCGTAGTCA TGCTATACTGATGGTACATGTAAAGAGATCTGTCAGGGGAAGAGATTCTGATCTTTCAAGCGAAAATGGCAACAACTCCCGCATGGTTAAAATTCTGAAG CCTCGTATTGTTCGTAAGGGAAAGCTAGTCATAGTAGATCTTGCTGGTTCAGAGCGAATTGATAAATCAGGGAGCGAGGGACACACATTGGAGGAAGCCA AATCCATCAATCTCTCTTTGATTGCACTAGGGAAGTGCATCAATGCTCTAGCAGAAAATAGCGCACATGTCCCAGTTCGTGATTCAAAGCTTACTAGATT GCTTAGAGATTCATTTGGAGGCACAGCTAGGACTTCACTGGTTATTACTATTGGTCCATCACCCCGCCATCGAGGAGAAACAGCAAGTACTATAATGTTT GGACAAAGAGCAATGAAGGTGGAGAATATGTTGAAATTAAAGGAGGAATTTGATTACAAAAGTTTGTCTAGAAGGTTAGACCTACAATTAGACAAATTTA TTGCAGAACATGAAAGGCAGCAGAAAGCATTTGAGGAAGAAATTGAAAGAGTAACTATGGAAGCACAAAATCGAATTTCAGAGTCTGAAAGAAACAATGC AGATGCATTGGAGAAGGAAAGAACTAAATATCAGAAAGAGTATATGGAATCAATAAAGAAGCTAGAAGAGAAATGGATGATGAATCAGCAGAAGCATGCT GGTGGAGAAAACATACCTGGATGCAAAGATGAAAGTTCAAATGCGATATCTAATGGAAAGGATTCCAGGGTAGCTAATATGGAGGAACTTGCAGAAATGA AAAAAAAGCTTCAGAAGGAAACTCTCTTGAGGAAGGTTGCTGAAGGGGAAGTTAATATCCTTAAAAGTCAACTCGCAGGATTGAAGAAGTCAGAGGCATT GGCAAAATCTGATATTTCAAAGCTTCAAAAGATGCTGGAAGATGAGGCTCGTCAGAAAGAAAAGCTTGAAGGGGAAATAGCAACACTGCAAAGTCAGCTG TTGCAAATAAGTTTTGAGGCTGATGAGACAGCAAGAAGAATTGATAAAGGAGGGTCTGAAGAAGTTCTTGGTGGTCTAGATTCTCTGATGTTGCAAGTTA GGCAGCCACAGATCAATGATTCAGGAAATGGAGAAAAGGCCTCAATAGCTAAACTCTTTGAACAAGTGGGATTGCAAAAGATCTTGTCTTTGCTTGAAGC AGAAGATGCTGATGTGCGAATTCATGCTGTGAAGGTGGTAGCAAATCTGGCAGCTGAAGAAACAAATCAAGAGAAGATTGTAGAAGCTGGAGGTCTTAAG TCCTTGTTGACACTGCTCAGAAGCTCCGAGGATGAAACCATATATAGAGTTGCAGCAGGTGCAATTGCCAATCTTGCTATGAATGAAACCAACCAAGAGC TAATAATGGCTCAAGGAGGCATTCGTTTGTTATCAATGACAGCAGGCAACGCTGAAGATCCTCAAACACTTCGAATGATTGCTGGAGCCATTGCAAATCT TTGTGGCAATGATAAGTTGCAGATGAAACTAAGAAGTGAAGGTGGCATCAAGGCTTTGCTAGGGATGGTTAGATGTAGGCATCCTGATGTACTTGCACAA GTTGCCCGTGGAATAGCAAATTTTGCCAAGTGCGAGTCCAGAGCATCTACTCAAGGAACCAAGACTGGAAGATCTCTTTTGATTGAGGATGGAGTGCTTC CATGGATTGTACAGAATGCTAAAAGTGAAGCCTCACAAATCAGGCACCATGTAGAGCTTGCGCTCTGTCACTTAGCACAACATGAAGTGAATGCAAAAGA CATGATTAGCGGAGGTGCACTCTGGGAACTGGTTCGTGTTTCACGAGACTGTTTGAGGGAGGATATAAGGACACTTGCCCATCGAACGCTAACATCCAGT CCCACTTTCCAAGCTGAAATGAGACGACTACGAATAGATCGTTGA
AA sequence Show only first row Show all	>Potri.001G115100.1 pacid=42791478 polypeptide=Potri.001G115133.1.p locus=Potri.001G115100 ID=Potri.001G115100.1.v4.1 annot-version=v4.1 MATTASIYRNGNYSKNSLITNNNKVERPPSVNSNPKNSLKSKSLRKSAPAALGAAKDDTGVPGRVRVAVRLRPRNAEEMVADADFADCVELQPEVKRLKL RKNNWDSDTYEFDELLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGRLGEEDTAARGIMVRAMEDILADVSLETNSVSISYLQLYM ETIQDLLNPTNDNISIVEDPKSGDVSLPGASLVEIRNQQSFVELLRLGEAHRFAANTKLNAESSRSHAILMVHVKRSVRGRDSDLSSENGNNSRMVKILK PRIVRKGKLVIVDLAGSERIDKSGSEGHTLEEAKSINLSLIALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIMF GQRAMKVENMLKLKEEFDYKSLSRRLDLQLDKFIAEHERQQKAFEEEIERVTMEAQNRISESERNNADALEKERTKYQKEYMESIKKLEEKWMMNQQKHA GGENIPGCKDESSNAISNGKDSRVANMEELAEMKKKLQKETLLRKVAEGEVNILKSQLAGLKKSEALAKSDISKLQKMLEDEARQKEKLEGEIATLQSQL LQISFEADETARRIDKGGSEEVLGGLDSLMLQVRQPQINDSGNGEKASIAKLFEQVGLQKILSLLEAEDADVRIHAVKVVANLAAEETNQEKIVEAGGLK SLLTLLRSSEDETIYRVAAGAIANLAMNETNQELIMAQGGIRLLSMTAGNAEDPQTLRMIAGAIANLCGNDKLQMKLRSEGGIKALLGMVRCRHPDVLAQ VARGIANFAKCESRASTQGTKTGRSLLIEDGVLPWIVQNAKSEASQIRHHVELALCHLAQHEVNAKDMISGGALWELVRVSRDCLREDIRTLAHRTLTSS PTFQAEMRRLRIDR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Potri.001G115100 [exp]	0	1	Pt-PAK.2
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.005G014600 [exp]	8.30	0.7916
AT3G17850			Protein kinase superfamily pro...		Potri.012G044700 [exp]	8.48	0.7715
AT5G05160		REDUCED IN LATE...	REDUCED IN LATERAL GROWTH1, Le...		Potri.001G209700 [exp]	12.48	0.7858
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.009G106200 [exp]	13.85	0.7634	SQN.1
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.001G437500 [exp]	17.88	0.6867
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.013G019000 [exp]	22.91	0.7735
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.013G041201 [exp]	23.81	0.7633
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.004G040300 [exp]	37.28	0.7616
AT1G51340			MATE efflux family protein (.1...		Potri.016G053600 [exp]	42.04	0.7340
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.014G192500 [exp]	51.38	0.7360

Compare expression of checked genes

Potri.001G115100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.