Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22810 254 / 1e-83 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G12050 244 / 2e-79 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G45430 238 / 4e-77 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT3G60870 202 / 4e-64 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1) AT2G35270 191 / 2e-59 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT2G42940 187 / 3e-58 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G14465 184 / 1e-56 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G04570 177 / 2e-53 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT4G17800 173 / 2e-52 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT1G76500 171 / 2e-51 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116900 [exp] 392 / 4e-138 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.002G149300 [exp] 300 / 6e-102 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1) Potri.014G070800 [exp] 300 / 6e-102 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.001G142800 [exp] 208 / 9e-66 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.005G202700 [exp] 202 / 4e-64 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1) Potri.010G074201 [exp] 203 / 6e-64 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.013G044500 [exp] 201 / 3e-63 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.003G091300 [exp] 198 / 7e-62 AT4G17800 315 / 4e-108 Predicted AT-hook DNA-binding family protein (.1) Potri.010G200100 [exp] 199 / 9e-62 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020763 [exp] 207 / 6e-66 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10015862 [exp] 196 / 7e-61 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10009301 [exp] 192 / 2e-59 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10006664 [exp] 184 / 1e-57 AT2G45430 178 / 2e-55 AT-hook motif nuclear-localized protein 22 (.1) Lus10006577 [exp] 186 / 6e-57 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10000519 [exp] 185 / 2e-56 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10031460 [exp] 178 / 1e-55 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 182 / 3e-55 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10031458 [exp] 169 / 4e-52 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10042551 [exp] 153 / 2e-44 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.001G115200.1 pacid=42790626 polypeptide=Potri.001G115200.1.p locus=Potri.001G115200 ID=Potri.001G115200.1.v4.1 annot-version=v4.1 ATGGATCCAGTAACGGCTCATGGCCATTCTCTTCCACCTCCTTTTCACACACGAGACTTCCAATTACACCAGCAGCAGCAACAGCAGCACCAATTTCATC ACCAACAACAGCAGAATTCAGAAGATGAGCAGAGTGGGAGTAGCAGTGGGCTAAACAAGTCCCTGAAACGAGAGCGAGACGAAAGTAACAATAGCATGGG CAACAGAGAAGGCCAAGAACTCATAACTTCAGGAGATGGAGATGGAGAGATCACAAGAAGACCACGAGGCAGACCTGCCGGATCCAAGAACAAGCCTAAG CCCCCAATTATCATCACACGGGATAGCGCAAACGCTCTACGCACTCACTTGATGGAGGTTGCTGATGGATGTGATATTGTTGAGAGTGTTGCTACATTTG CTAGGAGGAGACAACGAGGGGTTTGCATTATGAGTGGAACTGGAACAGTAACAAATGTAACCCTTAGGCAACCAGCTTCACCAGGTGCAATTGTGACTTT ACATGGTCGATTTGAGATATTGTCACTAGCTGGATCATTTTTGCCACCCCCAGCTCCACCCGCAGCTACTGGCTTGACCATATATTTAGCTGGTGGACAA GGGCAAGTTGTGGGTGGGAGTGTTGTTGGTACACTGACTGCTTCAGGTCCAGTTGTGATTATGGCAGCCTCATTTAGCAATGCTGCTTATGAGAGGCTCC CTCTAGAAGAGGAGGATCCACAAATGCCTATGCAAGGGGGTGGAATGGGGTCACCAGGAGGAGTGGGGCAGCAGCAGCAACAGCCACAGCAACATCAGGT TATGGCGGAGCAAAACGCGCAACTATTTCATGGATTGCCTCCTAATCTTCTCAATTCTATTCAATTACCAGCTGAGGCGTATTGGGCCACCGGTCGACCA CCATACTAA
AA sequence Show only first row Show all	>Potri.001G115200.1 pacid=42790626 polypeptide=Potri.001G115200.1.p locus=Potri.001G115200 ID=Potri.001G115200.1.v4.1 annot-version=v4.1 MDPVTAHGHSLPPPFHTRDFQLHQQQQQQHQFHHQQQQNSEDEQSGSSSGLNKSLKRERDESNNSMGNREGQELITSGDGDGEITRRPRGRPAGSKNKPK PPIIITRDSANALRTHLMEVADGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQ GQVVGGSVVGTLTASGPVVIMAASFSNAAYERLPLEEEDPQMPMQGGGMGSPGGVGQQQQQPQQHQVMAEQNAQLFHGLPPNLLNSIQLPAEAYWATGRP PY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22810	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G115200 [exp]	0	1
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.010G176600 [exp]	1.73	0.9736
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Potri.010G181000 [exp]	2.82	0.9719
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.018G095900 [exp]	3.46	0.9672
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041500 [exp]	6.00	0.9664
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.009G022800 [exp]	6.32	0.9547
AT5G06200		CASP4	Casparian strip membrane domai...		Potri.016G075400 [exp]	6.32	0.9577
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G170800 [exp]	6.63	0.9454
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.003G205700 [exp]	7.34	0.9574	RAP23
AT1G12890	AP2_ERF		Integrase-type DNA-binding sup...		Potri.019G088000 [exp]	8.48	0.9508	ERF62
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.008G048300 [exp]	9.16	0.9373

Compare expression of checked genes

Potri.001G115200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.