Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22790 487 / 2e-169 MATE efflux family protein (.1) AT4G29140 248 / 8e-76 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT1G71870 241 / 1e-73 MATE efflux family protein (.1) AT1G58340 234 / 1e-70 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G23030 224 / 8e-67 MATE efflux family protein (.1) AT5G19700 221 / 1e-65 MATE efflux family protein (.1) AT5G52050 209 / 2e-61 MATE efflux family protein (.1) AT2G38510 208 / 4e-61 MATE efflux family protein (.1) AT5G49130 205 / 8e-60 MATE efflux family protein (.1) AT1G73700 164 / 6e-45 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116700 [exp] 769 / 0 AT4G22790 441 / 2e-151 MATE efflux family protein (.1) Potri.003G121400 [exp] 262 / 4e-81 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 253 / 5e-78 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 253 / 7e-78 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 249 / 7e-76 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 248 / 9e-76 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.012G133500 [exp] 244 / 5e-74 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 233 / 8e-70 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 208 / 1e-60 AT2G38510 597 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007006 [exp] 565 / 0 AT4G22790 549 / 0.0 MATE efflux family protein (.1) Lus10017836 [exp] 252 / 2e-77 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 252 / 5e-77 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10027417 [exp] 246 / 1e-74 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10028230 [exp] 227 / 1e-67 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10012944 [exp] 208 / 1e-60 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10009788 [exp] 202 / 1e-58 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10038987 [exp] 192 / 6e-55 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10041994 [exp] 192 / 7e-55 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 181 / 8e-51 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.001G115400.1 pacid=42791905 polypeptide=Potri.001G115400.1.p locus=Potri.001G115400 ID=Potri.001G115400.1.v4.1 annot-version=v4.1 ATGTCTCCACCATCAAAATCTCAAGAGAGCCCTATTGGCAAAACCTCTCAACCTCCACCAATATCTTCACTTACCACCCGAATATGGCCGGCAAATCTTA TGCAAATGATTCTTCAGGAAATAAAAACACAGCGAGGTATAACTCTGCCCTTGTTGGCAATGAATTTGACATGGTTTTCCAAAACAGCCATCACAACTGT TTTTTTAGGCAGGCTTGGAGAGCTCCAGTTGGTTAGCGGCACTCTTGGGTTCACTTTTGCTAACGTCACTGGCTTTTCTGTCTTGAATGGGCTATCCGCT GCCATGGAACCTCTCTGTGGTCAAGCTCATGGGGCTAAGAATTTCATGCTGCTACACAAGACCCTCCTCATGGTAACATTCTTGTTGCTATTAGCAACCC TGCCTATATCTTTCTTGTGGCTTAACGTGGACAAAATTCTAATCCATTGTGGCCAACAAGAAGACGTTTCGCGTGTTGCAAAGAACTACCTTTTCTATCT CTTCCCTGACTTAATAATCACCTGTTTGTTATGTCCTCTTAAAGTCTACTTGAGCTCACAAAGTGTAACAGTTCCTATAATGTTTAGCTCAGCTTTGGGC CTAGCTTTTCACATCCCGATCAACATCTTACTTGTAAAAGCCAAGGGTCTTGAAGGGGTGTCTATGGCAATATGGATAACCGATCTTATGGTCGTGATTT TACTTGCTTCATACGTGTTGATGATGGAAAACAGGAAGGGAGGGAATTGGAAGGAGGGAGGGTGGTTAGACCAGGGCGTTCATGACTGGCTCAGGTTGCT AAAACTTTGTGCACCATGTTGCCTTACCACCTGCCTTGAATGGTGGTGCTGGGAGATCTTGATCTTGCTTACCGGACGACTACCAAATGCCAAGCAAGCA GTTGGGGTGATAGCAATTGTGCTAAACTTTGACTACTTGCTTTTCTCTGTGATGCTATCACTAGCAACTTGTGCTTCCACTCGTGTGTCGAATGAGCTTG GTGCAAATCAAGCAGGTCGTGCTTACCAGTCAGCATATGTGTCTCTAGGAGCAAGCACCATTTCAGGTTGCATTGGTGCTTTGGTGATGGTAGGAGTCCG AGGTGTTTGGGGGTCTCTTTTTAGCCATGATCAGGGAATCATAAAAGGTGTAAAGAAGATGATGTTGCTAATGGCTTTGATTGAAGTAGTAAATTTTCCT TTAGTAGTCTGTGGAGGCATCGTCCGGGGAACAGCTCGGCCATGGTTGGGCATGTATGCCAATCTTGGTGGGTTCTACTTCCTAGCCTTACCAATGGCAG TACTCTTAGCCTTCAAAGCAGCACTAGGGCTCGGTGGGTTGTTGGTAGGTTTCTTGATTGGATTGGTCGCGTGCTTGATTTTGTTGGTAGTATTTGTTGT GAGGATTGATTGGGAAGTAGAAGCTGAAAAGGCACAAAAACTGGCGTCCTGTGACGTGCAAGAAGTGGACGTTAAAGAACGCGTGAATCACCGAACCACG GAAACAGTTGATGGTGCTGAAGCATGGGAATGA
AA sequence Show only first row Show all	>Potri.001G115400.1 pacid=42791905 polypeptide=Potri.001G115400.1.p locus=Potri.001G115400 ID=Potri.001G115400.1.v4.1 annot-version=v4.1 MSPPSKSQESPIGKTSQPPPISSLTTRIWPANLMQMILQEIKTQRGITLPLLAMNLTWFSKTAITTVFLGRLGELQLVSGTLGFTFANVTGFSVLNGLSA AMEPLCGQAHGAKNFMLLHKTLLMVTFLLLLATLPISFLWLNVDKILIHCGQQEDVSRVAKNYLFYLFPDLIITCLLCPLKVYLSSQSVTVPIMFSSALG LAFHIPINILLVKAKGLEGVSMAIWITDLMVVILLASYVLMMENRKGGNWKEGGWLDQGVHDWLRLLKLCAPCCLTTCLEWWCWEILILLTGRLPNAKQA VGVIAIVLNFDYLLFSVMLSLATCASTRVSNELGANQAGRAYQSAYVSLGASTISGCIGALVMVGVRGVWGSLFSHDQGIIKGVKKMMLLMALIEVVNFP LVVCGGIVRGTARPWLGMYANLGGFYFLALPMAVLLAFKAALGLGGLLVGFLIGLVACLILLVVFVVRIDWEVEAEKAQKLASCDVQEVDVKERVNHRTT ETVDGAEAWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22790			MATE efflux family protein (.1...		Potri.001G115400 [exp]	0	1
AT5G07080			HXXXD-type acyl-transferase fa...		Potri.019G126400 [exp]	5.47	0.7867
AT4G24900			unknown protein		Potri.015G096700 [exp]	8.66	0.8275
					Potri.019G016120 [exp]	19.28	0.7558
					Potri.008G206733 [exp]	21.33	0.8172
					Potri.008G024601 [exp]	23.87	0.8168
AT5G14680			Adenine nucleotide alpha hydro...		Potri.017G071700 [exp]	23.87	0.8002
AT1G74150			Galactose oxidase/kelch repeat...		Potri.013G008200 [exp]	26.73	0.7511
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.005G037300 [exp]	27.87	0.7796
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191000 [exp]	35.98	0.8166
AT2G15830			unknown protein		Potri.009G107050 [exp]	36.66	0.7730

Compare expression of checked genes

Potri.001G115400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.