Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACR7.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12420 627 / 0 ACR8 ACT domain repeat 8 (.1) AT4G22780 589 / 0 ACR7 ACT domain repeat 7 (.1) AT1G69040 479 / 5e-168 ACR4 ACT domain repeat 4 (.1.2) AT3G01990 428 / 5e-148 ACR6 ACT domain repeat 6 (.1) AT2G03730 423 / 8e-146 ACR5 ACT domain repeat 5 (.1.2) AT1G76990 419 / 2e-144 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT5G25320 366 / 8e-123 ACT-like superfamily protein (.1) AT5G65890 325 / 3e-107 ACR1 ACT domain repeat 1 (.1.2) AT2G39570 71 / 6e-13 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 55 / 6e-08 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116600 [exp] 852 / 0 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.010G138600 [exp] 485 / 4e-170 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 480 / 3e-168 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 481 / 7e-168 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 458 / 2e-159 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 451 / 5e-157 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 434 / 4e-150 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.005G185600 [exp] 427 / 1e-147 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.002G074800 [exp] 420 / 1e-144 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006662 [exp] 603 / 0 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1) Lus10036827 [exp] 469 / 7e-164 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 459 / 7e-160 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 459 / 7e-160 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10012550 [exp] 448 / 1e-155 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 447 / 2e-155 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10028646 [exp] 424 / 6e-146 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 420 / 9e-142 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 356 / 6e-119 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10007004 [exp] 332 / 1e-109 AT1G12420 288 / 2e-92 ACT domain repeat 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Potri.001G115600.1 pacid=42791177 polypeptide=Potri.001G115600.1.p locus=Potri.001G115600 ID=Potri.001G115600.1.v4.1 annot-version=v4.1 ATGGAGTGGAGTGCTTGTTCGGATGAATACGAGAAGCTTGTTATAAGGATGACCACTCCCAGGGTCGTCATCGACAATGCCGTTTCCTCTAAAGCGACTG TTGTCAAGGTTGATAGTGCTAGAAAACATAGAATCTTACTCGAAGCTGTTCAAGTCCTCACGGATCTGAACCTTTCTATAAAGAAGGCTTACATTTCTTC CGATGGACGCTGGTTCATGGATGTTTTTCATGTGACTGATCTAAACGGAAATAAGTTAACTGACGAGAGTGTTATTAACTACATTGAGCAGTCACTTGGT ACCATTCATCCTGGGAAAACAACCGGTTCTAACGGTCTAACAGCATTAGAACTAACTGGTACCGACCGGATTGGCCTTCTTTCAGAGGTATTTGCAGTAC TAGCTGACCTACAATGCAGTGTGGTCGATGCTAAAGTCTGGACTCACAATGGTCGGATTGCATCACTGATGTATGTGAAAGATTGCAATTCAGGTTCACC AATTGAGGACACACAGCATATTGATAGAATAGAGGCACGTTTAAGGAATGTTCTTAAGGGAGACAATGATATCAGGAGCGCGAAAACCATGGTATCAATG GCCGTCACACATACGGAGAGAAGGTTGCATCAAGTGATGTTTGCTGATAGGGACTATGAGAGAAAGCCTATTTTGCAGCCTAGTGGTGATTCTCCGGTAG TGACGGTGCAAAATTGGGTGGAGAGAGGTTATTCGGTTGTGAATGTTCAGTGCAAGGACAGAACAAAGCTTTTGTTTGATGTTGTTTGCACGTTGACAGA CATGGAATACATTGTGTTTCATGCGACTATCAACACAGCAGGAGACAGAGCATACCTGGAATTCTACATCAGGCACACTGATGGAACCCCAATTAGTTCA GAGCCCGAGAGGCAACGTGTAATTCAGTGCTTACAAGCTGCGGTTGAAAGAAGAGCATCCGAGGGTGTGAGGCTAGAATTATGTACACCTGATAGGCAGG GCCTTTTAGCTGATGTGACGAGAACATTTAGAGAGAATGGTCTTAATGTGACAAGGGCTGAGATATCCACAGCAGGAGACATGGCTCTAAATGTATTTTA TGTAACGGATGCAGTAGGTAACCCGGCTGATCCTAAACTAATCGAATCGGTCCGACAAAAGATTGGAGTGAGTAATTTGAAAGTGAAGGAATTGCCACCA TTGATTTACCATCAAGAGGCAGAAAGGGAAGATCAAACGGCAGGGGTTGCTGGGACGGTGTTGTTATCACTTGGAAGCCTAGTGAAAAAGAATTTATACC ATTTGGGATTGATCAGATCATATTCTTAA
AA sequence Show only first row Show all	>Potri.001G115600.1 pacid=42791177 polypeptide=Potri.001G115600.1.p locus=Potri.001G115600 ID=Potri.001G115600.1.v4.1 annot-version=v4.1 MEWSACSDEYEKLVIRMTTPRVVIDNAVSSKATVVKVDSARKHRILLEAVQVLTDLNLSIKKAYISSDGRWFMDVFHVTDLNGNKLTDESVINYIEQSLG TIHPGKTTGSNGLTALELTGTDRIGLLSEVFAVLADLQCSVVDAKVWTHNGRIASLMYVKDCNSGSPIEDTQHIDRIEARLRNVLKGDNDIRSAKTMVSM AVTHTERRLHQVMFADRDYERKPILQPSGDSPVVTVQNWVERGYSVVNVQCKDRTKLLFDVVCTLTDMEYIVFHATINTAGDRAYLEFYIRHTDGTPISS EPERQRVIQCLQAAVERRASEGVRLELCTPDRQGLLADVTRTFRENGLNVTRAEISTAGDMALNVFYVTDAVGNPADPKLIESVRQKIGVSNLKVKELPP LIYHQEAEREDQTAGVAGTVLLSLGSLVKKNLYHLGLIRSYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Potri.001G115600 [exp]	0	1	Pt-ACR7.1
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G048800 [exp]	3.00	0.9034
AT3G19150		ACK1, ICK4, KRP...	ARABIDOPSIS CDK INHIBITOR 1, K...		Potri.005G137500 [exp]	4.58	0.8885
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Potri.001G112200 [exp]	6.00	0.8911	KNAT7.1
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.009G089800 [exp]	8.06	0.8764
AT1G52140			unknown protein		Potri.014G139900 [exp]	8.71	0.8442
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	13.26	0.8732
AT2G27930			PLATZ transcription factor fam...		Potri.006G119400 [exp]	15.49	0.8644
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.014G147000 [exp]	16.85	0.8765	Pt-RIC2.1
AT5G26910			unknown protein		Potri.013G010500 [exp]	17.54	0.8652
AT4G20300			Protein of unknown function (D...		Potri.001G073400 [exp]	17.66	0.8362

Compare expression of checked genes

Potri.001G115600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.