Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22758 117 / 5e-32 unknown protein AT2G27830 53 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116200 [exp] 270 / 2e-91 AT4G22758 131 / 5e-37 unknown protein Potri.009G149200 [exp] 51 / 1e-07 AT2G27830 183 / 6e-59 unknown protein Potri.004G188600 [exp] 50 / 2e-07 AT2G27830 160 / 5e-50 unknown protein Potri.003G116300 [exp] 47 / 3e-06 AT2G27830 125 / 2e-36 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000386 [exp] 114 / 1e-30 AT4G22758 139 / 2e-40 unknown protein Lus10006995 [exp] 82 / 6e-20 AT4G22758 110 / 9e-31 unknown protein Lus10020544 [exp] 53 / 2e-08 AT2G27830 181 / 3e-58 unknown protein Lus10000385 [exp] 50 / 1e-07 AT2G27830 110 / 5e-31 unknown protein Lus10009391 [exp] 45 / 2e-05 AT2G27830 130 / 7e-36 unknown protein Lus10027525 [exp] 40 / 0.0003 AT1G70780 104 / 3e-29 unknown protein Lus10039287 [exp] 40 / 0.0004 AT1G70780 104 / 4e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G116200.1 pacid=42788254 polypeptide=Potri.001G116200.1.p locus=Potri.001G116200 ID=Potri.001G116200.1.v4.1 annot-version=v4.1 ATGGCGATCGGTGAAGCACTCCAAGCCTGTAAAGTTTTTGAAGCGATGTGGTCCTCAGAGCCCATGATGGTGTGGGGGAGCCGTGCTGAAGATAGTGTTG ATCAGCAGAAAAAGAGGAGCAGCATCTTACTGTACGAGGGTGATGGTGGTGTTTTGTTTAGGCCTCATACTTGTACAGATGTTCTTGCTTCTTCTCCTTC TTTGATCGTGCCCACTAATTTCTCTCCTCGCTCCAGTCTTGATCAGGGATACAAGAAGGATGCAGAAGTAGTGATTACTGTAACAGTTGAAGGGAGTCCA GGGCCTGTTAGGACCATGGTTAAATTGGGATCTAATGTAGAGGACACATTTAAGCTTGTGGTAGACAAGTACAGTGAAGAAGGGCGAACCCCAAAACTTG ATAAGAATGCAGCATCAACATGTGAATTGCATCATTCCTATTTCAGCCTTCGAAGTTTAGATAAATCAGAAATGGTTGGGGATGTCGGTAGCAGAAGCTT CTATCTCAGAAGCAGCAGCCGCAATCGTAGAAGTAATGGAGGCTCAGCTTCTTCCATTACAGAAACAGTTTCTGGGAGAGCTAACCCACCACCACCACCA CCAATTCCATGCCCTCTATTCTTACTTCCGGAATTCTTTGCTAGCAAATTTGGCAAAATTGTGAGAAGGACGCTTCAGCTTTGGAAGGTCTTGGTTAGCT GGAAATGA
AA sequence Show only first row Show all	>Potri.001G116200.1 pacid=42788254 polypeptide=Potri.001G116200.1.p locus=Potri.001G116200 ID=Potri.001G116200.1.v4.1 annot-version=v4.1 MAIGEALQACKVFEAMWSSEPMMVWGSRAEDSVDQQKKRSSILLYEGDGGVLFRPHTCTDVLASSPSLIVPTNFSPRSSLDQGYKKDAEVVITVTVEGSP GPVRTMVKLGSNVEDTFKLVVDKYSEEGRTPKLDKNAASTCELHHSYFSLRSLDKSEMVGDVGSRSFYLRSSSRNRRSNGGSASSITETVSGRANPPPPP PIPCPLFLLPEFFASKFGKIVRRTLQLWKVLVSWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22758			unknown protein		Potri.001G116200 [exp]	0	1
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Potri.004G086300 [exp]	4.00	0.7051
AT1G69800			Cystathionine beta-synthase (C...		Potri.017G053600 [exp]	12.76	0.7333
AT5G01780			2-oxoglutarate-dependent dioxy...		Potri.016G132300 [exp]	12.84	0.7066
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	21.79	0.6948
AT1G66180			Eukaryotic aspartyl protease f...		Potri.004G085000 [exp]	31.52	0.6699
AT1G28270		RALFL4	ralf-like 4 (.1)		Potri.004G044900 [exp]	31.62	0.6793
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Potri.010G141201 [exp]	32.68	0.6734
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.005G012400 [exp]	32.86	0.6499
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.019G095200 [exp]	34.39	0.6720
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	45.95	0.6775

Compare expression of checked genes

Potri.001G116200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.